From aab668e48f3d3ea0d0e7e036ff76aaa276f92a08 Mon Sep 17 00:00:00 2001 From: martenson <1814954+martenson@users.noreply.github.com> Date: Wed, 12 Aug 2026 08:28:08 +0000 Subject: [PATCH] Update all tools of usegalaxy.cz --- usegalaxy.cz/annotation.yml.lock | 6 ++++++ usegalaxy.cz/assembly.yml.lock | 5 +++++ usegalaxy.cz/evolution.yml.lock | 1 + usegalaxy.cz/gemini.yml.lock | 5 +++++ usegalaxy.cz/graph_display_data.yml.lock | 2 ++ usegalaxy.cz/machine_learning.yml.lock | 2 ++ usegalaxy.cz/metabolomics.yml.lock | 7 +++++++ usegalaxy.cz/metagenomic_analysis.yml.lock | 1 + usegalaxy.cz/multiple_alignments.yml.lock | 1 + usegalaxy.cz/ncbi_blast.yml.lock | 1 + usegalaxy.cz/rna_analysis.yml.lock | 2 ++ usegalaxy.cz/text_manipulation.yml.lock | 2 ++ usegalaxy.cz/variant_calling.yml.lock | 10 ++++++++++ 13 files changed, 45 insertions(+) diff --git a/usegalaxy.cz/annotation.yml.lock b/usegalaxy.cz/annotation.yml.lock index d29c21d..35c5564 100644 --- a/usegalaxy.cz/annotation.yml.lock +++ b/usegalaxy.cz/annotation.yml.lock @@ -125,6 +125,7 @@ tools: revisions: - 23494763e39e - 8ec7636fa875 + - f3534b94ad05 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: tbl2gff3 @@ -330,6 +331,7 @@ tools: - 78c75f134c16 - 862f5a86854d - c2ef298da409 + - d8b0de0554a9 - f9bf6a8d8547 tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -490,6 +492,7 @@ tools: owner: iuc revisions: - 96e6283e4745 + - b7e91ff1a894 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: braker @@ -555,6 +558,7 @@ tools: owner: iuc revisions: - 80c713789d13 + - a30ef2a2b3a9 - e3e5f208e93c tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -575,6 +579,7 @@ tools: - name: hmmer_hmmemit owner: iuc revisions: + - 82d6ca8212dc - 96b127c59e6a - be03abdc6451 tool_panel_section_id: annotation @@ -960,6 +965,7 @@ tools: owner: iuc revisions: - 0b833dc20f00 + - 2b9b64614d0c - f421fd0c42ea - fc7334661489 tool_panel_section_id: annotation diff --git a/usegalaxy.cz/assembly.yml.lock b/usegalaxy.cz/assembly.yml.lock index 525672d..d4a99c3 100644 --- a/usegalaxy.cz/assembly.yml.lock +++ b/usegalaxy.cz/assembly.yml.lock @@ -15,6 +15,7 @@ tools: - name: verkko owner: iuc revisions: + - 43edaa0b6f3d - cf54dafa0403 tool_panel_section_id: assembly tool_panel_section_label: Assembly @@ -29,6 +30,7 @@ tools: owner: galaxy-australia revisions: - 098506c54016 + - 14143ced290a - 2263989660f5 - 3c8227556fdc - 48c13389050d @@ -53,6 +55,7 @@ tools: - name: hifiasm owner: bgruening revisions: + - 09cf7b520734 - 170061c052ad - 5d365d5cbe9d - 60024a528cbd @@ -116,6 +119,7 @@ tools: - name: trycycler_reconcile_msa owner: iuc revisions: + - 394a5d236e29 - 59bd28f6265d - cb1e3db43020 - ed312479d9eb @@ -644,6 +648,7 @@ tools: - 53dd00a4ab68 - 54a68f38cf3f - 7d9ee8cd14b8 + - 81bc4c8bcf10 - 840822c1e84a tool_panel_section_id: assembly tool_panel_section_label: Assembly diff --git a/usegalaxy.cz/evolution.yml.lock b/usegalaxy.cz/evolution.yml.lock index 48cc584..3c35d6e 100644 --- a/usegalaxy.cz/evolution.yml.lock +++ b/usegalaxy.cz/evolution.yml.lock @@ -12,6 +12,7 @@ tools: owner: iuc revisions: - 18a61a9c1601 + - 241108ef3506 - 6bbd30d58cf4 - 9b892d7f82cc - e727e82945af diff --git a/usegalaxy.cz/gemini.yml.lock b/usegalaxy.cz/gemini.yml.lock index 6b270a7..f98489d 100644 --- a/usegalaxy.cz/gemini.yml.lock +++ b/usegalaxy.cz/gemini.yml.lock @@ -18,6 +18,7 @@ tools: owner: iuc revisions: - 2270a8b83c12 + - cca3391dc8b4 tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_pathways @@ -42,6 +43,7 @@ tools: owner: iuc revisions: - 334e946cacd4 + - fb2890358aa3 tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_gene_wise @@ -72,17 +74,20 @@ tools: owner: iuc revisions: - 4b5123d51e8c + - 84ede9f5fddb tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_fusions owner: iuc revisions: - c00dcd1455a0 + - dc09f8b919a4 tool_panel_section_id: gemini tool_panel_section_label: Gemini - name: gemini_roh owner: iuc revisions: + - d509e44a3fe0 - e8349da26ed5 tool_panel_section_id: gemini tool_panel_section_label: Gemini diff --git a/usegalaxy.cz/graph_display_data.yml.lock b/usegalaxy.cz/graph_display_data.yml.lock index 4246c38..ed2b316 100644 --- a/usegalaxy.cz/graph_display_data.yml.lock +++ b/usegalaxy.cz/graph_display_data.yml.lock @@ -66,6 +66,7 @@ tools: - name: jbrowse owner: iuc revisions: + - 1483285bdb7a - a6e57ff585c0 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data @@ -133,6 +134,7 @@ tools: revisions: - 1334cb4c6b68 - 73486cc6170e + - 7d01da0b9e18 - e9005d1f3cfd tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data diff --git a/usegalaxy.cz/machine_learning.yml.lock b/usegalaxy.cz/machine_learning.yml.lock index 7ebcf9e..6346aba 100644 --- a/usegalaxy.cz/machine_learning.yml.lock +++ b/usegalaxy.cz/machine_learning.yml.lock @@ -7,6 +7,7 @@ tools: revisions: - 2d20b3a1babd - c58c1a99578b + - e40b523de00d tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning - name: sklearn_pca @@ -617,6 +618,7 @@ tools: revisions: - 35172fb694d8 - 42c57f739aa1 + - '763401373029' - 7f92e08ad375 - c0814e7a5d8e - fe8485a77d69 diff --git a/usegalaxy.cz/metabolomics.yml.lock b/usegalaxy.cz/metabolomics.yml.lock index 476fccf..d70c398 100644 --- a/usegalaxy.cz/metabolomics.yml.lock +++ b/usegalaxy.cz/metabolomics.yml.lock @@ -374,6 +374,7 @@ tools: - 1c30ff90f3ae - 73d82de36369 - 75a1b3f7bacc + - abc7c44ae8f7 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_fillpeaks @@ -381,6 +382,7 @@ tools: revisions: - 26d77e9ceb49 - 3bc94c3abb28 + - 564d6ab0cf18 - a8d866a71ba1 - de0d85537ee3 tool_panel_section_id: metabolomics @@ -418,6 +420,7 @@ tools: - 15646e937936 - 378ddb410225 - 3990a65b45a4 + - 734dfb2af03a - b02d1992a43a tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics @@ -585,6 +588,7 @@ tools: - name: dimet_differential_analysis owner: iuc revisions: + - b7d8a8202ad6 - c46d33411495 - fff032d6115a tool_panel_section_id: metabolomics @@ -592,6 +596,7 @@ tools: - name: dimet_abundance_plot owner: iuc revisions: + - 13846689db6b - 4b4dead87318 - c9040bdb918c - f65ffb01a6be @@ -729,6 +734,7 @@ tools: - name: dimet_differential_multigroup_analysis owner: iuc revisions: + - 603a8e254ee3 - c4bcde2c17d0 - e88cf5618b40 tool_panel_section_id: metabolomics @@ -774,6 +780,7 @@ tools: revisions: - b1a9eddf73d9 - cb8c4ae59da9 + - f9bfb18d3fb1 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: mfassignr_kmdnoise diff --git a/usegalaxy.cz/metagenomic_analysis.yml.lock b/usegalaxy.cz/metagenomic_analysis.yml.lock index 16f52b1..d9fd38c 100644 --- a/usegalaxy.cz/metagenomic_analysis.yml.lock +++ b/usegalaxy.cz/metagenomic_analysis.yml.lock @@ -454,6 +454,7 @@ tools: - name: cat_prepare owner: iuc revisions: + - 1ab4a7c40daa - 51906c8c692a - 8315b5cebb82 - a40bbd70b8b1 diff --git a/usegalaxy.cz/multiple_alignments.yml.lock b/usegalaxy.cz/multiple_alignments.yml.lock index 2fe1a12..191f04c 100644 --- a/usegalaxy.cz/multiple_alignments.yml.lock +++ b/usegalaxy.cz/multiple_alignments.yml.lock @@ -63,6 +63,7 @@ tools: owner: iuc revisions: - 27fff8d3793e + - 298dceed950c - 2d2fe522553d - e18267f90096 tool_panel_section_id: multiple_alignments diff --git a/usegalaxy.cz/ncbi_blast.yml.lock b/usegalaxy.cz/ncbi_blast.yml.lock index 017da88..5478554 100644 --- a/usegalaxy.cz/ncbi_blast.yml.lock +++ b/usegalaxy.cz/ncbi_blast.yml.lock @@ -42,6 +42,7 @@ tools: - name: taxonomy_krona_chart owner: crs4 revisions: + - 7d01da0b9e18 - c9f8fef1df74 - e9005d1f3cfd tool_panel_section_id: ncbi_blast diff --git a/usegalaxy.cz/rna_analysis.yml.lock b/usegalaxy.cz/rna_analysis.yml.lock index c6a16ba..7608c9c 100644 --- a/usegalaxy.cz/rna_analysis.yml.lock +++ b/usegalaxy.cz/rna_analysis.yml.lock @@ -21,6 +21,7 @@ tools: - name: kallisto_pseudo owner: iuc revisions: + - 3741c4204eb5 - 87c11c05d238 - ce5d418183c5 - fce88d02de6c @@ -45,6 +46,7 @@ tools: revisions: - 4f9c4e6566e5 - c971db6f0fe5 + - f71c54748ff2 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: isoformswitchanalyzer diff --git a/usegalaxy.cz/text_manipulation.yml.lock b/usegalaxy.cz/text_manipulation.yml.lock index df6f687..73239bf 100644 --- a/usegalaxy.cz/text_manipulation.yml.lock +++ b/usegalaxy.cz/text_manipulation.yml.lock @@ -148,6 +148,7 @@ tools: - name: filter_tabular owner: iuc revisions: + - 26fc6cf774d4 - 557ec8d7087d - 90f657745fea tool_panel_section_id: text_manipulation @@ -284,6 +285,7 @@ tools: owner: iuc revisions: - 521bcbb5aa16 + - 5c9cb302c242 - a3c79d2b1041 - e74df764bfd9 - f5f86d7506d5 diff --git a/usegalaxy.cz/variant_calling.yml.lock b/usegalaxy.cz/variant_calling.yml.lock index b95de6c..d118074 100644 --- a/usegalaxy.cz/variant_calling.yml.lock +++ b/usegalaxy.cz/variant_calling.yml.lock @@ -213,6 +213,7 @@ tools: - c0f8fe52948e - cb441f258c37 - ccc439243918 + - d8fb9fa763a0 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: sniffles @@ -220,6 +221,7 @@ tools: revisions: - 93c4b04a0769 - ceff2f6a5368 + - dcd4681273f7 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: vardict_java @@ -518,6 +520,7 @@ tools: - name: bcftools_cnv owner: iuc revisions: + - 2b7e7aa56527 - 61dfbc82ffc8 - 6d35a3780bfd - ccb83bf54de0 @@ -527,6 +530,7 @@ tools: owner: iuc revisions: - 1959cc43b414 + - 1be3e9c59601 - f78492521996 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling @@ -541,6 +545,7 @@ tools: owner: iuc revisions: - 5804f786060d + - 67ef1dddcad9 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: exomedepth @@ -556,6 +561,7 @@ tools: - 1e1291983bc7 - 85dc96ebc770 - a5937157062f + - c752293b798c - e698621cca1f - ef2c525bd8cd tool_panel_section_id: variant_calling @@ -619,6 +625,7 @@ tools: revisions: - 4653aeb60243 - 80dc747a394d + - d9741a570506 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: cnvkit_call @@ -777,6 +784,7 @@ tools: owner: iuc revisions: - 591cc8518033 + - 7aea930ab6cc - a2f8dc22d7c0 - fcf941c241cc tool_panel_section_id: variant_calling @@ -786,6 +794,7 @@ tools: revisions: - acfd6984d130 - bdc67eeb0bc9 + - f44f646aa172 - fa65af07ce7d tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling @@ -914,6 +923,7 @@ tools: - b8c112397c5e - c8ecdd5bdb32 - c91e09b60325 + - cf3f306bce1b - fdbd97ff825e tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling