Hi!
I have been trying to install python-javabridge in order to compile CellProfiler, but it throws up an error.
ERROR: Command errored out with exit status 1:
command: /home/sumit/anaconda3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-if_onu76/python-javabridge_387671473cdc4677a98abd9c06105664/setup.py'"'"'; file='"'"'/tmp/pip-install-if_onu76/python-javabridge_387671473cdc4677a98abd9c06105664/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-q50e9u59
cwd: /tmp/pip-install-if_onu76/python-javabridge_387671473cdc4677a98abd9c06105664/
Complete output (9 lines):
Traceback (most recent call last):
File "", line 1, in
File "/tmp/pip-install-if_onu76/python-javabridge_387671473cdc4677a98abd9c06105664/setup.py", line 412, in
ext_modules=ext_modules(),
File "/tmp/pip-install-if_onu76/python-javabridge_387671473cdc4677a98abd9c06105664/setup.py", line 142, in ext_modules
library_dirs = [os.path.dirname(jvm_so)]
File "/home/sumit/anaconda3/lib/python3.8/posixpath.py", line 152, in dirname
p = os.fspath(p)
TypeError: expected str, bytes or os.PathLike object, not NoneType
----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/5e/d5/78f75ee0a6beb51a606c50cc17d8f99782653f04dce6d5e12feaef089692/python-javabridge-4.0.3.tar.gz#sha256=3fee0c235efcfe866f95695fdc0b6289eab2371043b32ff4ca6feff098de59c5 (from https://pypi.org/simple/python-javabridge/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
Any idea how could I fix it?
Thanks!
Hi!
I have been trying to install python-javabridge in order to compile CellProfiler, but it throws up an error.
ERROR: Command errored out with exit status 1:
command: /home/sumit/anaconda3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-if_onu76/python-javabridge_387671473cdc4677a98abd9c06105664/setup.py'"'"'; file='"'"'/tmp/pip-install-if_onu76/python-javabridge_387671473cdc4677a98abd9c06105664/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-q50e9u59
cwd: /tmp/pip-install-if_onu76/python-javabridge_387671473cdc4677a98abd9c06105664/
Complete output (9 lines):
Traceback (most recent call last):
File "", line 1, in
File "/tmp/pip-install-if_onu76/python-javabridge_387671473cdc4677a98abd9c06105664/setup.py", line 412, in
ext_modules=ext_modules(),
File "/tmp/pip-install-if_onu76/python-javabridge_387671473cdc4677a98abd9c06105664/setup.py", line 142, in ext_modules
library_dirs = [os.path.dirname(jvm_so)]
File "/home/sumit/anaconda3/lib/python3.8/posixpath.py", line 152, in dirname
p = os.fspath(p)
TypeError: expected str, bytes or os.PathLike object, not NoneType
----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/5e/d5/78f75ee0a6beb51a606c50cc17d8f99782653f04dce6d5e12feaef089692/python-javabridge-4.0.3.tar.gz#sha256=3fee0c235efcfe866f95695fdc0b6289eab2371043b32ff4ca6feff098de59c5 (from https://pypi.org/simple/python-javabridge/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
Any idea how could I fix it?
Thanks!