diff --git a/research/live-pin-drift-audit-seed5985/README.md b/research/live-pin-drift-audit-seed5985/README.md new file mode 100644 index 0000000000..124df3c046 --- /dev/null +++ b/research/live-pin-drift-audit-seed5985/README.md @@ -0,0 +1,192 @@ +# Live-byte source-pin drift audit at base 0fdd7d82 + +**Tooling audit and precise obstruction record; no new kappa, no certificate, pin, +frozen package or frontier change.** Drawn card `replay-runtime` (track +verifier-engineering, chooser OS nonce `5985f17ee9293abc98cbb69a85efb569`), +scope refined; see [TASK.md](TASK.md) and [TASK.json](TASK.json). Base +`0fdd7d82de03e43c9e5a1000dfbcd380d1b687d2`. Aaron Wang, with help from opencode +(substantial AI assistance). Apache-2.0. + +## Question + +Several merged replay-speed tooling changes rewrote shared scripts +(`scripts/exclusion_circuit.py`, `scripts/shared_point_circuit.py`, +`scripts/experiments/disjoint_tensor.py` and others). Repository checkers pin +the bytes of such scripts by SHA-256. Which recorded pins no longer match the +bytes their path holds, which checker rejections can be reproduced from those +mismatches, and which later commits touched each pinned file after its manifest +last changed? + +## What a pin means here + +The audit enumerates every JSON `{repo path: sha256}` entry (exact rule in +`RESULT.json`) and classifies each by the **shape** of its container: + +- shape **L**, `check_sources`-style `"files": {path: sha256}` maps (for + example `research/skip-clones/SOURCE.json`), +- shape **R-input** and **R-provenance**, `research_package.py` `SOURCES.json` + records with `usage: "input"` and `usage: "provenance"` respectively, and +- shape **P**, every other `{path: sha256}` entry (for example the + "catalogue SHA-256" recorded in claims and ledgers). + +Shape is a syntactic category, not a statement about what a consumer does with +the entry. Two live-byte consumers are named and reproduced below: +`research/skip-clones/clone_io.py:check_sources` hashes current bytes for the +L-shaped pins of `research/skip-clones`, and `scripts/research_package.py +--check-only` hashes current working bytes for R-input rows of the packages it +checks ("working source drift"); for that validator, R-provenance rows bind the +recorded git blob instead. No other consumer was audited per entry. In +particular, P-shaped entries are not guaranteed to be inert: at this frozen +head `scripts/verify_pr_reconciliation.py:207` hashes every current path in +`ledger["source_sha256"]`, and `scripts/verify_replay_coverage.py:98` hashes +every current path in `selected["source_sha256"]`, and those entries fall into +shape P. Drift in P or R-provenance is therefore **candidate** drift: this +package records it, and neither calls it a failure nor calls it harmless. + +Distinguishing the demonstrated failures from the candidate drift is the point +of the separation: a stale digest may be a historical fact or a live check, and +only a replayed consumer decides which. + +## Established (all recomputed by `verify.py`; counts in `RESULT.json`) + +| Shape | Pins | Match | Drift | Unresolved | Ignored | +|---|---:|---:|---:|---:|---:| +| L (check_sources-style) | 20,737 | 19,735 | 127 | 46 | 829 | +| R-input (usage="input") | 1,841 | 1,814 | 22 | 0 | 5 | +| R-provenance (usage="provenance") | 1,363 | 806 | 517 | 0 | 40 | +| P (all other entries) | 2,457,086 | 2,379,080 | 16,673 | 2,215 | 59,118 | + +Total 2,481,027 entries across 17,525 tracked JSON manifests (2 manifests +unreadable). The inventory is bound to the `git ls-files` tracked set with the +`.json` extension matched case-insensitively: 17,529 tracked JSON files minus +this package's own 4. Twenty-two of the manifests are tracked with an uppercase +`.JSON` extension (`PREMERGE.JSON` and `SELECTION.JSON` in each of +`research/community-efficient{100,...,1000}-audit/`, plus `ENDING-OPEN.JSON` +and `NEXT-QUEUE-SUMMARY.JSON` in `research/community-efficient500-audit/`); +they are retained and contribute zero pins. A working-tree glob or a +case-sensitive `*.json` query drops those 22 and reports 17,503, which is how +an earlier replay of this package failed saved-census equality in a review +checkout. The 149 live-drift pins touch 48 distinct files. + +1. **Smallest falsifying instance, reproduced exactly.** + `research/skip-clones/clone_io.py:check_sources` raises + `ValueError: Pinned inherited source changed: scripts/exclusion_circuit.py`. + Its manifest recorded `b253f9d7318b...`, which equals the file's blob at the + manifest's own last commit `c02590dd`; the current bytes hash + `f9fbcd6e85e4...`. The bytes moved in exactly two later commits: + `d8029ee0` ("Tooling: faster ExclusionCircuit.verify leave-two-out supports", + blob `40bdb64670...`) and `d7d8bfcb` ("Tooling: fold + ExclusionCircuit.verify_embedding reverse masks into #2001", + blob `f9fbcd6e85...`, PR https://github.com/CrocSwap/integer-mult-bounds/pull/2001 ). + The package's `make skip-clones-verify` replay and `tests/test_skip_clones.py` + cannot run at base. This is the drawn card's coverage question answered + after the fact: the speedups updated the shared certificate pins they + touched (the refreshed pins in `certificates/dyadic-central-factor.json` + and three sibling certificates now record `f9fbcd6e85...` and verify clean) + but left older frozen packages' live pins stale. + +2. **Registered rejections, reproduced exactly.** `scripts/research_package.py + --check-only` fails three audited packages with `working source drift`: + `research/clean-selector-embedding` and + `research/complex-frame-plane-rail-seedca04cc` + (`docs/research/agent-task-catalog.json`, recorded `6686ad58f1...`, current + `d46eb6d5b3...`, changed by priority revision 4 "Focus research revision 4 on + concrete missing interfaces"), and + `research/complex-cartesian-grid-screen-seed506af` + (`docs/research/bottleneck-brief.md`, recorded `a5e3165696...`, current + `bbc9396c5c...`). Of the 22 drifted R-input pins, 10 pin evolving documents + (the task catalogue, bottleneck brief or PR ledger) as `usage: "input"`: any + later document update disables those replays. The remaining 12 pin tool + scripts changed by the speedups above or by later tooling (for example + `research/exact-frame-containment`, `research/finite-bit-rank-cache-seed87` + and `research/rational-containment-performance` pin + `scripts/exclusion_circuit.py` as `usage: "input"`). + +3. **Provenance is recorded for every live-drift pin** in `RESULT.json` + (`drift_provenance`): for each (manifest, pinned path) pair, the manifest's + last commit, the pinned file's blob digest at that commit, and every later + commit touching the pinned file with its blob digest. Of the 149 pairs, 68 + record a digest equal to the file's blob at the manifest's last commit (the + pin was honest when the manifest froze and later commits moved the file); + 70 record a state older than the manifest's last commit, typical of vendored + review snapshots that pin a historical selected record; 11 pairs have no + blob at that commit. + +## What this does not establish + +No pin is repaired here: refreshing a frozen package's recorded digest would +rewrite the very evidence the pin protects, and vendoring freeze-time bytes +would change frozen files. Both are maintainer decisions, so this package stops +at the exact ledger and the two reproductions. `research/shared-point-digest` +already records the decision as its open question ("Pin repair is outside this +tooling change"), and this ledger is the data that follow-up needs. This is not +a claim that any mathematical result is wrong: the drift disables replay +checks, it does not falsify a certificate. The audit covers JSON `{path: sha256}` +pins only; not `Makefile` targets, environment pins, or non-JSON manifests. +Two of the 17,525 manifests were unreadable JSON and are counted, not audited. +An earlier revision of this README said 17,528 here; that figure equals 17,525 +external manifests plus the three JSON files this package itself then carried +(`RESULT.json`, `SOURCES.json`, `TASK.json`; `VERIFY.json` is written last) and +is corrected to 17,525 everywhere. Only four drifted pins are demonstrated +failures — the pins named in the reproduced rejections (the skip-clones pin of +`scripts/exclusion_circuit.py` and the three registered R-input pins). The +remaining 145 live-drift pins and all P/R-provenance drift are candidate +drift: recorded here, with no consumer replayed against them. + +## Reproduce + +```sh +python3 -I -B research/live-pin-drift-audit-seed5985/verify.py +``` + +Expected: + +```text +PASS_LIVE_PIN_DRIFT_AUDIT pins=2481027 manifests=17525 L(match=19735,drift=127,unresolved=46,ignored=829) R-input(match=1814,drift=22,unresolved=0,ignored=5) R-prov(match=806,drift=517,unresolved=0,ignored=40) P(match=2379080,drift=16673,unresolved=2215,ignored=59118) live_drift_paths=48 controls=8 skip_clones=ValueError +``` + +The run recomputes the whole ledger over the git-tracked manifest inventory +(case-insensitive `.json` extension) and requires it to match `RESULT.json` +exactly, so the census is identical in a complete frozen checkout and on +case-sensitive platforms. Eight controls: the headline digest is fixed; a +matching pin reports clean (the refreshed `certificates/dyadic-central-factor.json` pin of +`scripts/exclusion_circuit.py`); a corrupted digest registers as drift; a +missing target is unresolved; a non-repository key is ignored; a malformed +`"files"` map is not treated as an L manifest; a second independent +enumeration is byte-identical; and the inventory retains a tracked +case-variant `.JSON` manifest (the 22-file extension rule above). `--write` +regenerates `RESULT.json`. + +## Open next questions + +- **Pin repair policy for the 149 live-drift pins.** For each frozen package, + should a maintainer (a) refresh the recorded digest with the old digest and + this provenance retained, (b) vendor the freeze-time bytes and check those, + or (c) declare the replay historical and bind it to its recorded commit? + First step: apply one option to `research/skip-clones` alone and rerun + `tests/test_skip_clones.py`. Blocked by: modifying frozen package bytes or + pins needs maintainer authorization. +- **Should `usage: "input"` be reserved for genuinely required live tools?** + Ten packages pin the evolving task catalogue or brief as a live input, so + every priority revision disables them. First step: a one-line convention in + `docs/research/research-package-guide.md` distinguishing live inputs from + provenance pins. Blocked by: documentation ownership. +- **Automated drift guard.** This audit is deterministic and cheap enough + (~100 s) to run in CI against a pinned base. First step: a check that fails + only on *new* L/R-input drift relative to a recorded baseline. Blocked by: + maintainer choice of the baseline policy. + +## Credit + +Predecessors: Chafik Boukhalfa (`research/skip-clones`, whose pinned replay is +the smallest falsifying instance); Douglas Colkitt (`scripts/research_package.py` +pin validation and its input/provenance distinction); the authors of +`research/exclusion-support-masks`, `research/exclusion-embedding-masks` +(PR https://github.com/CrocSwap/integer-mult-bounds/pull/2001 ) and +`research/disjoint-tensor-support-masks` (the merged speedups under audit, which +already updated the shared certificate pins they touched); the author of +`research/shared-point-digest` (the recorded "Pin repair is outside this tooling +change" open question); woklerx (`research/git-provenance-stream`, pin-validation +tooling precedent). No predecessor code was imported; the verifier is +independently written and only executes `research/skip-clones/clone_io.py` and +`scripts/research_package.py` as black-box reproductions of their own checks. diff --git a/research/live-pin-drift-audit-seed5985/RESULT.json b/research/live-pin-drift-audit-seed5985/RESULT.json new file mode 100644 index 0000000000..ba80ea9ab4 --- /dev/null +++ b/research/live-pin-drift-audit-seed5985/RESULT.json @@ -0,0 +1,4503 @@ +{ + "controls": { + "control_a_headline_digest_fixed": true, + "control_b_matching_pin_reports_clean": true, + "control_c_corrupted_digest_registers_drift": true, + "control_d_missing_target_is_unresolved": true, + "control_e_non_repo_key_is_ignored": true, + "control_f_shape_l_detected": true, + "control_g_recomputation_stable": true, + "control_h_tracked_inventory_retains_case_variant_json": true + }, + "ledger": { + "audited_base_commit": "0fdd7d82de03e43c9e5a1000dfbcd380d1b687d2", + "counts": { + "L": { + "drift": 127, + "ignored": 829, + "match": 19735, + "unresolved": 46 + }, + "P": { + "drift": 16673, + "ignored": 59118, + "match": 2379080, + "unresolved": 2215 + }, + "R-input": { + "drift": 22, + "ignored": 5, + "match": 1814, + "unresolved": 0 + }, + "R-provenance": { + "drift": 517, + "ignored": 40, + "match": 806, + "unresolved": 0 + } + }, + "drift_provenance": [ + { + "current_sha256": "e7920c3305bd5e3058d2614fadc064ec1f658029183325f600c7ee4b56a7906e", + "entries": [ + { + "blob_sha256_at_manifest_freeze": "f72787ebf4a991e32705c7fb7ef7ad559a9964b27c0f91d1b5a034c05027cfb0", + "later_commits": [ + { + "blob_sha256": "e7920c3305bd5e3058d2614fadc064ec1f658029183325f600c7ee4b56a7906e", + "commit": "f015b04c74801fa330f818d178e809c760fb5469", + "subject": "Speed up exact single-intersection Gram replay with symmetric packing" + } + ], + "manifest": "research/leech-minor-byte-lanes/PINS.json", + "manifest_freeze_commit": "521c86e7fd4d0fbd1ed4e0524aa26a1e45861477", + "recorded": 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"original_card": { + "id": "replay-runtime", + "question": "Can one measured replay bottleneck be sped up without dropping coverage?", + "starting_points": [ + "scripts/run_isolated_tests.py", + "scripts/verify_replay_coverage.py", + "certificates/selected-result.json" + ], + "methods": [ + "Profile one isolated replay and optimize the measured bottleneck.", + "Design source-bound reuse with explicit dependency invalidation and negative controls." + ], + "acceptance_gate": "Report before/after wall time on the same fixture, retained checks and invalidation behavior.", + "first_step": { + "command": [ + "python3", + "-B", + "scripts/research_baseline.py" + ], + "expected": "PASS_RESEARCH_BASELINE_BINDINGS_ONLY", + "inspect": "Read the selected reproduction command and choose a single replay stage for profiling.", + "scope": "Positive control / source-bound orientation only; this is not a new construction or full cold replay." + }, + "first_experiment": "Measure one unchanged fixture, preserve check coverage, and test one optimization with invalidation controls.", + "bottleneck_link": "Faster trustworthy replays increase review throughput and let mechanism candidates be checked sooner.", + "allowed_variations": [ + "Profile one stage or design one source-bound cache boundary." + ], + "scope_change_triggers": [ + "Skipping coverage or comparing different fixtures to claim speedup." + ], + "overlap_terms": [ + "replay runtime", + "cache invalidation", + "isolated tests" + ] + }, + "scope_status": "refined", + "actual_scope": "Audit whether merged replay-speed tooling changes retained live source-pin coverage: enumerate every JSON {path: sha256} pin at base 0fdd7d82, separate live checker pins (check_sources files-maps and research_package.py usage=input rows) from historical receipts, recompute each digest against the bytes its path holds, record for every live drift the later commits touching its pinned file, and reproduce one failing frozen replay and one failing registered check.", + "scope_change_reason": "The card asks to speed up one measured replay bottleneck without dropping coverage. The ExclusionCircuit.verify speedups are already merged (d8029ee0, d7d8bfcb), so this audits their coverage-retention side effect, which the card's own scope-change trigger names, and supplies the missing explicit dependency invalidation as a deterministic drift ledger with negative controls. No fixture is sped up and no wall-time comparison is claimed.", + "bottleneck_link": "Faster trustworthy replays raise review throughput only while their shared source pins stay valid; this audit shows merged speedups silently disabled frozen package replays and registered checks, and hands the maintainer the exact repair data.", + "stop_rule": "One complete enumeration at base 0fdd7d82 with byte-equal recomputation, one reproduced frozen-replay failure, one reproduced registered rejection and eight controls; no pin repair, no broader test-suite triage.", + "outcome": "completed", + "evidence": "RESULT.json ledger (2481027 pins across 17525 tracked manifests, any-case .json extension; 127 L drift, 22 R-input drift, 48 drift paths) with per-pin commit provenance; the research/skip-clones ValueError reproduction; three research_package.py --check-only working-source-drift rejections; PASS_LIVE_PIN_DRIFT_AUDIT from verify.py (original run under CPython 3.13 on Windows; review-fix rerun under CPython 3.12 on Windows and in a complete frozen checkout); README tables and limits. Review fix: census bound to the git ls-files tracked inventory with case-insensitive .json matching (the 22 tracked .JSON manifests are retained and named in the README), README count 17528 corrected to 17525, P/R-provenance drift relabelled candidate drift because scripts/verify_pr_reconciliation.py:207 and scripts/verify_replay_coverage.py:98 hash live bytes for some P-shaped entries.", + "author": "Aaron Wang", + "ai_assistance": "Substantial AI assistance: with help from opencode. No independent human review claimed.", + "budget_minutes": 60, + "open_questions": [ + { + "question": "Which pin-repair policy should each frozen package get for its 149 live-drift pins: refreshed digest with old digest retained, vendored freeze-time bytes, or a replay declared historical and bound to its recorded commit?", + "why_it_matters": "Refreshing a frozen pin rewrites the evidence it protects and vendoring changes frozen files, so no contributor should choose unilaterally; without a policy the affected replays stay red for everyone.", + "first_step": "Apply one option to research/skip-clones alone and rerun tests/test_skip_clones.py.", + "blocked_by": "Modifying frozen package bytes or pins needs maintainer authorization." + }, + { + "question": "Should usage: input be reserved for genuinely required live tools, instead of evolving documents like the task catalogue, bottleneck brief and PR ledger?", + "why_it_matters": "Ten packages pin those documents as live inputs, so every priority revision disables their registered replay even though their mathematics is unchanged.", + "first_step": "Add one distinguishing sentence to docs/research/research-package-guide.md about live inputs versus provenance pins.", + "blocked_by": "Documentation ownership and maintainer review." + }, + { + "question": "Can this deterministic drift audit run in CI against a recorded baseline so only new L/R-input drift fails?", + "why_it_matters": "The audit recomputes the whole ledger in about 100 seconds, so new stale pins could be caught at PR time instead of months later.", + "first_step": "Record a baseline RESULT.json and a comparison mode that fails only on new live drift.", + "blocked_by": "Maintainer choice of the baseline policy and CI wiring." + } + ] +} diff --git a/research/live-pin-drift-audit-seed5985/TASK.md b/research/live-pin-drift-audit-seed5985/TASK.md new file mode 100644 index 0000000000..d7bca8a891 --- /dev/null +++ b/research/live-pin-drift-audit-seed5985/TASK.md @@ -0,0 +1,83 @@ +# Task card — live-byte source-pin drift audit (written before substantial computation) + +Task ID / proposed scope key: drawn card `replay-runtime` (track verifier-engineering, +chooser OS nonce `5985f17ee9293abc98cbb69a85efb569`, scope key `a76657a85478d269d19f`), +scope **refined** as recorded below. + +Base commit; exact predecessor and dependency heads: +- Base: `0fdd7d82de03e43c9e5a1000dfbcd380d1b687d2` (origin/main at draw). +- Predecessors (read-only, credited): `research/exclusion-support-masks` (commit + `d8029ee0`, "faster ExclusionCircuit.verify leave-two-out supports"), + `research/exclusion-embedding-masks` (commit `d7d8bfcb`, "fold + ExclusionCircuit.verify_embedding reverse masks into #2001", PR + https://github.com/CrocSwap/integer-mult-bounds/pull/2001 ), + `research/shared-point-digest` (records the open question "Pin repair is + outside this tooling change"), `research/git-provenance-stream` (registered + pin-validation tooling precedent), `research/skip-clones` (smallest + falsifying instance; Chafik Boukhalfa). + +Concrete object and question: +Every live-byte source pin `{repo-relative path: sha256}` recorded in JSON +manifests in this repository at base `0fdd7d82`. Question: which recorded pins +no longer match the bytes their path currently holds, which registered package +checks and frozen replays can be reproduced rejecting on those mismatches, and +which later commits touched each pinned file after its manifest froze? + +Scope status: refined; reason: the drawn card asks whether one measured replay +bottleneck can be sped up without dropping coverage. The ExclusionCircuit.verify +speedups are already merged; this audits their coverage-retention side effect +(the card's own scope-change trigger names skipping coverage) and supplies the +missing explicit dependency invalidation. No optimizer or fixture is compared. + +Existing restriction being changed (or exact claim being audited): +Audited premise: `check_sources`-style and `research_package.py` live-byte pin +checks assume pinned source bytes remain unchanged after freeze. The two merged +speedups changed `scripts/exclusion_circuit.py` bytes. + +Method; explicit parameter ranges/candidate alphabet: +Stdlib-only enumeration rule (stated exactly in the README): take the JSON +manifests from the git-tracked inventory (`git ls-files`, `.json` extension +matched case-insensitively, this package excluded); every mapping entry whose +key matches +`^[A-Za-z0-9_.+-]+(/[A-Za-z0-9_.+-]+)+$`, contains no `:`, and whose value +matches `^[0-9a-f]{64}$` is one candidate pin. A pin is **drifted** when its +target exists in the working tree and `sha256(target bytes)` differs; a pin is +**unresolved** when its target does not exist at the pinned key (an alternate +vendor path is not substituted). Provenance: `git log ..HEAD -- ` +where `` is the last commit touching the manifest. Impact census: +`scripts/research_package.py --package +--check-only` classified pass / working-source drift / other; plus the exact +reproduction of `research/skip-clones/clone_io.py:check_sources`. + +Nearest overlapping PRs and why this adds something: +No open PR or claim covers pin repair (entry overlap, refined terms "exclusion_circuit", +"source pin drift", "pinned source changed", "stale pin", "leave-two-out", "pin +manifest", complete pagination 2026-10-14 20:42Z: 8 matches, all the +exclusion-mask tooling packages and `research/shared-point-digest`'s "Pin repair +is outside this tooling change" open question). This adds the complete drift +ledger and provenance that the acknowledged follow-up needs. + +Optimistic full cost budget; required observable improvement: +Not a construction: the observable is a complete, deterministic ledger +(enumeration rule + counts + per-pin verdicts + per-file provenance), one +reproduced failing check, and rejected controls. No wall-time claim. + +Success evidence; falsification test; time/compute cap: +Success: `verify.py` recomputes the ledger from scratch and prints PASS with +stable counts; the skip-clones failure reproduces byte-exact. Falsification +controls: a corrupted digest must register as drift; a fabricated drift record +must reject; a pin whose bytes match must report clean. One session; the census +runs once and its receipt is pinned. + +Predecessor authors; intended artifact and reproduction command: +Predecessors: Douglas Colkitt (tooling, research_package.py), Chafik Boukhalfa +(research/skip-clones), the exclusion-mask tooling authors (PR +https://github.com/CrocSwap/integer-mult-bounds/pull/2001 and the two mask +packages), the shared-point-digest author (open question). Artifact: +`research/live-pin-drift-audit-seed5985/` with `verify.py` and pinned receipts. +Attribution: Aaron Wang, with help from opencode. Apache-2.0. + +Session record: branch `research/agent-42-pin-drift-audit-5985f17e`. No advance +CLAIM was posted to the discussion board (the bounded audit ran within one +session); the completed result is reported as FINDING/DONE, not as a +retrospective reservation. diff --git a/research/live-pin-drift-audit-seed5985/VERIFY.json b/research/live-pin-drift-audit-seed5985/VERIFY.json new file mode 100644 index 0000000000..4fe7b7c699 --- /dev/null +++ b/research/live-pin-drift-audit-seed5985/VERIFY.json @@ -0,0 +1,19 @@ +{ + "schema_version": 1, + "status": "ready", + "python": "3.12", + "requirements": [], + "inputs": [], + "commands": [ + { + "argv": [ + "{python}", + "-I", + "-B", + "research/live-pin-drift-audit-seed5985/verify.py" + ], + "timeout_seconds": 600, + "checks": "Recomputes the complete live/receipt pin ledger over the git-tracked JSON inventory (case-insensitive .json extension) and requires exact equality with RESULT.json; reproduces the research/skip-clones ValueError and three research_package.py working-source-drift rejections; runs eight controls (fixed headline digest, matching pin reports clean, corrupted digest registers drift, missing target unresolved, non-repository key ignored, malformed files-map not treated as a live manifest, independent re-enumeration identical, tracked case-variant .JSON manifest retained)." + } + ] +} diff --git a/research/live-pin-drift-audit-seed5985/verify.py b/research/live-pin-drift-audit-seed5985/verify.py new file mode 100644 index 0000000000..12252e8a10 --- /dev/null +++ b/research/live-pin-drift-audit-seed5985/verify.py @@ -0,0 +1,355 @@ +#!/usr/bin/env python3 +"""Live-byte source-pin drift audit at base 0fdd7d82. + +Two named checkers read pinned source bytes live: + + L check_sources-style: a manifest member "files" mapping repository paths + to SHA-256 digests of the bytes the path must currently hold (behavior + reproduced for research/skip-clones/clone_io.py:check_sources); + R research_package.py SOURCES.json records (path/usage/git_blob/sha256): + that validator checks usage=="input" rows against the current working + file and binds usage=="provenance" rows to the recorded git blob. + +This audit enumerates every JSON pin entry in the git-tracked inventory, +classifies each pin by container shape as L, R-input, R-provenance or P (a +syntactic catch-all, e.g. a catalogue digest recorded at task draw), +recomputes every digest against the bytes the pinned path currently holds, +and records for each L/R drift the commits that touched the pinned file after +the pin's manifest last changed. Shape is not consumer semantics: no per-entry +claim is made that a P or R-provenance entry is never compared to live bytes; +see enumeration_rule in RESULT.json for the known counterexamples. + +Scope: an audit and a precise obstruction record. No pin, frozen package or +certificate is modified. Aaron Wang, with help from opencode. Apache-2.0. +""" +import hashlib +import json +from pathlib import Path +import re +import subprocess +import sys + +sys.set_int_max_str_digits(0) # pinned manifests carry large exact integers + +HERE = Path(__file__).resolve().parent +ROOT = HERE.parents[1] +RESULT = HERE / 'RESULT.json' +EXCLUDE_DIRS = {'.git', '.worktrees'} +SELF = HERE.name +AUDITED_BASE = '0fdd7d82de03e43c9e5a1000dfbcd380d1b687d2' +TOP_PREFIXES = ('research/', 'scripts/', 'references/', 'certificates/', + 'formal/', 'docs/', 'tests/', 'upstream/', 'artifacts/', + 'notes/', 'patches/') +KEY_RE = re.compile(r'^[A-Za-z0-9_.+-]+(/[A-Za-z0-9_.+-]+)+$') +DIGEST_RE = re.compile(r'^[0-9a-f]{64}$') +BLOB_RE = re.compile(r'^[0-9a-f]{40,64}$') + + +def require(condition, message): + if not condition: + raise ValueError(message) + + +def sha256(data): + return hashlib.sha256(data).hexdigest() + + +def git(*args): + result = subprocess.run(['git', *args], cwd=ROOT, capture_output=True, check=False) + require(result.returncode == 0, 'git failed: ' + ' '.join(args) + ': ' + + result.stderr.decode('utf-8', 'replace')) + return result.stdout + + +def git_blob_at(commit, path): + result = subprocess.run(['git', 'show', commit + ':' + path], + cwd=ROOT, capture_output=True, check=False) + return None if result.returncode else sha256(result.stdout) + + +class DigestCache: + """One read per distinct pinned path; a checker reads the same bytes.""" + + def __init__(self): + self.cache = {} + + def current(self, key): + if key not in self.cache: + target = ROOT / key + self.cache[key] = sha256(target.read_bytes()) if target.is_file() else None + return self.cache[key] + + +CACHE = DigestCache() + + +def classify(key, recorded): + """live | receipt target verdict: match | drift | unresolved | ignored.""" + if not key.startswith(TOP_PREFIXES): + return 'ignored', None + current = CACHE.current(key) + if current is None: + return 'unresolved', None + return ('match' if current == recorded else 'drift'), current + + +def is_files_map(value): + return isinstance(value, dict) and bool(value) and all( + isinstance(k, str) and KEY_RE.fullmatch(k) and ':' not in k and + isinstance(v, str) and DIGEST_RE.fullmatch(v) for k, v in value.items()) + + +def is_sources_records(value): + return isinstance(value, list) and bool(value) and all( + isinstance(row, dict) and isinstance(row.get('path'), str) and + isinstance(row.get('sha256'), str) and DIGEST_RE.fullmatch(row['sha256']) and + isinstance(row.get('git_blob'), str) and BLOB_RE.fullmatch(row['git_blob']) and + row.get('usage') in ('input', 'provenance') for row in value) + + +def walk_json(): + """The manifest inventory is the tracked set, not the working tree. + + git ls-files is identical in every complete checkout on every platform. + The .json extension is matched case-insensitively because 22 tracked + manifests use .JSON; a filesystem glob or a case-sensitive '*.json' + query drops them and once made this census report 17,503 instead of + 17,525. + """ + listing = git('ls-files', '-z').decode('utf-8').split('\x00') + for rel in sorted(p for p in listing if p and p.lower().endswith('.json')): + parts = rel.split('/') + if parts[0] in EXCLUDE_DIRS or SELF in parts: + continue + yield ROOT / rel + + +def collect(node, out, shape): + """Record every {repo path: sha256} pin with its manifest-member shape. + + R-input rows are the only research_package.py rows that validator checks + against live working bytes; R-provenance rows record historical blobs. + """ + if isinstance(node, dict): + for key, value in node.items(): + if key == 'files' and is_files_map(value): + for k, v in value.items(): + out.append((k, v, 'L')) + continue + if key == 'files' and is_sources_records(value): + for row in value: + out.append((row['path'], row['sha256'], + 'R-input' if row['usage'] == 'input' else 'R-provenance')) + continue + if isinstance(value, str) and KEY_RE.fullmatch(key) and ':' not in key \ + and DIGEST_RE.fullmatch(value): + out.append((key, value, shape)) + else: + collect(value, out, shape) + elif isinstance(node, list): + for item in node: + collect(item, out, shape) + + +def build_ledger(): + pins = [] + decode_failures = 0 + manifests_seen = 0 + for path in walk_json(): + manifests_seen += 1 + try: + node = json.loads(path.read_bytes().decode('utf-8')) + except (UnicodeDecodeError, ValueError): + decode_failures += 1 + continue + found = [] + collect(node, found, 'P') + manifest = path.relative_to(ROOT).as_posix() + for key, digest, shape in found: + pins.append({'manifest': manifest, 'key': key, 'recorded': digest, 'shape': shape}) + pins.sort(key=lambda row: (row['manifest'], row['key'], row['shape'])) + shapes = ('L', 'R-input', 'R-provenance', 'P') + counts = {shape: {'match': 0, 'drift': 0, 'unresolved': 0, 'ignored': 0} for shape in shapes} + live_drift, live_unresolved = [], [] + for row in pins: + status, current = classify(row['key'], row['recorded']) + counts[row['shape']][status] += 1 + if row['shape'] in ('L', 'R-input') and status == 'drift': + row['current'] = current + live_drift.append(row) + if row['shape'] in ('L', 'R-input') and status == 'unresolved': + live_unresolved.append(row) + return {'pins_seen': len(pins), 'manifests_seen': manifests_seen, 'counts': counts, + 'live_drift': live_drift, 'live_unresolved': live_unresolved, + 'json_decode_failures': decode_failures} + + +def add_provenance(ledger): + by_path = {} + for row in ledger['live_drift']: + by_path.setdefault(row['key'], []).append(row) + provenance_rows = [] + for key in sorted(by_path): + entries = [] + for row in sorted(by_path[key], key=lambda r: (r['manifest'], r['shape'])): + manifest = row['manifest'] + freeze = git('log', '-1', '--format=%H', '--', manifest).decode().strip() + at_freeze = git_blob_at(freeze, key) if freeze else None + raw = git('log', '--format=%H%x01%s', freeze + '..HEAD', '--', key).decode('utf-8', 'replace') + later = [] + for line in raw.splitlines(): + if not line: + continue + commit, _, subject = line.partition('\x01') + later.append({'commit': commit, 'subject': subject, + 'blob_sha256': git_blob_at(commit, key)}) + entries.append({'manifest': manifest, 'shape': row['shape'], + 'manifest_freeze_commit': freeze, 'recorded': row['recorded'], + 'blob_sha256_at_manifest_freeze': at_freeze, + 'later_commits': later}) + provenance_rows.append({'path': key, 'current_sha256': CACHE.current(key), + 'pins': len(by_path[key]), 'entries': entries}) + ledger['drift_provenance'] = provenance_rows + return ledger + + +def skip_clones_reproduction(): + """Smallest falsifying instance: research/skip-clones source-pin check.""" + import importlib.util + path = ROOT / 'research/skip-clones/clone_io.py' + spec = importlib.util.spec_from_file_location('pin_drift_clone_io', path) + module = importlib.util.module_from_spec(spec) + spec.loader.exec_module(module) + try: + module.check_sources(module.CERTIFICATE_INPUTS) + except ValueError as error: + return {'result': 'ValueError', 'message': str(error)} + return {'result': 'no error'} + + +def registered_package_sample(ledger): + """Reproduce registered rejections caused by live (usage=input) drift. + + Selection is deterministic: the sorted research/ packages whose SOURCES + record at least one drifted usage=input pin and that carry TASK.json, + plus two legacy packages seen failing for an unrelated metadata reason. + """ + drifted = sorted({row['manifest'].rsplit('/', 1)[0] for row in ledger['live_drift'] + if row['shape'] == 'R-input' and row['manifest'].endswith('/SOURCES.json')}) + picks = [pkg for pkg in drifted if (ROOT / pkg / 'TASK.json').is_file()][:3] + picks += ['research/bit-compression-provenance', 'research/central-factor-packed'] + out = [] + for package in picks: + result = subprocess.run([sys.executable, '-B', 'scripts/research_package.py', + '--package', package, '--check-only'], + cwd=ROOT, capture_output=True, check=False) + out.append({'package': package, 'returncode': result.returncode, + 'stdout': result.stdout.decode('utf-8', 'replace').strip()[-400:], + 'stderr': result.stderr.decode('utf-8', 'replace').strip()[-400:]}) + return out + + +def controls(ledger, stable): + checks = {} + head = next(r for r in ledger['drift_provenance'] if r['path'] == 'scripts/exclusion_circuit.py') + checks['control_a_headline_digest_fixed'] = head['current_sha256'] == \ + 'f9fbcd6e85e442cbd0926ac0887414e20735b2dc923d2d5822c803ceb46726d3' + clean = json.loads((ROOT / 'certificates/dyadic-central-factor.json').read_bytes()) + recorded = None + stack = [clean] + while stack: + node = stack.pop() + if isinstance(node, dict): + for key, value in node.items(): + if key == 'scripts/exclusion_circuit.py' and isinstance(value, str): + recorded = value + else: + stack.append(value) + elif isinstance(node, list): + stack.extend(node) + checks['control_b_matching_pin_reports_clean'] = ( + recorded == head['current_sha256'] and + classify('scripts/exclusion_circuit.py', recorded)[0] == 'match') + corrupted = head['current_sha256'][:-1] + ('0' if head['current_sha256'][-1] != '0' else '1') + checks['control_c_corrupted_digest_registers_drift'] = \ + classify('scripts/exclusion_circuit.py', corrupted)[0] == 'drift' + checks['control_d_missing_target_is_unresolved'] = \ + classify('scripts/does-not-exist-pin-drift-control.py', head['current_sha256'])[0] == 'unresolved' + checks['control_e_non_repo_key_is_ignored'] = \ + classify('data/local-fixture.json', head['current_sha256'])[0] == 'ignored' + checks['control_f_shape_l_detected'] = is_files_map( + {'scripts/exclusion_circuit.py': head['current_sha256']}) and not is_files_map( + {'scripts/exclusion_circuit.py': 'nope'}) + checks['control_g_recomputation_stable'] = stable + inventory = [p.relative_to(ROOT).as_posix() for p in walk_json()] + checks['control_h_tracked_inventory_retains_case_variant_json'] = ( + len(inventory) == ledger['manifests_seen'] and + any(not name.endswith('.json') for name in inventory)) + require(all(checks.values()), 'control failed: ' + json.dumps(checks, sort_keys=True)) + return checks + + +def main(argv=None): + argv = sys.argv[1:] if argv is None else argv + write = '--write' in argv + ledger = add_provenance(build_ledger()) + ledger['skip_clones_reproduction'] = skip_clones_reproduction() + ledger['registered_package_sample'] = registered_package_sample(ledger) + ledger['audited_base_commit'] = AUDITED_BASE + ledger['enumeration_rule'] = ( + 'Every JSON mapping entry whose key matches ^[A-Za-z0-9_.+-]+(/[A-Za-z0-9_.+-]+)+$ ' + 'and contains no ":" and whose value matches ^[0-9a-f]{64}$. The manifest inventory ' + 'is the git-tracked set at the checkout head (git ls-files) with the .json extension ' + 'matched case-insensitively (22 tracked manifests use .JSON and are retained; a ' + 'working-tree glob or a case-sensitive *.json query drops them and reports 17503 ' + 'instead of 17525), excluding .git, .worktrees and this package. Shape L: member ' + '"files" whose value is such a mapping (check_sources-style live pin). Shape R-input ' + 'and R-provenance: member "files" whose value is a list of path/usage/git_blob/sha256 ' + 'records (research_package.py pins); for that validator only usage=="input" rows are ' + 'checked against live working bytes ("working source drift"), usage=="provenance" ' + 'rows bind historical blobs. Shape P: any other such entry (e.g. a catalogue digest ' + 'recorded at task draw). Shapes are syntactic categories, not consumer semantics: the ' + 'audit has not established per entry whether a consumer compares it to live bytes, and ' + 'at least scripts/verify_pr_reconciliation.py:207 (ledger["source_sha256"]) and ' + 'scripts/verify_replay_coverage.py:98 (selected["source_sha256"]) hash current bytes ' + 'for some P-shaped entries. Classification of live pins is against the bytes a checker ' + 'reads at the pinned path; other keys are counted ignored.') + if write: + stable = build_ledger() == {key: ledger[key] for key in + ('pins_seen', 'manifests_seen', 'counts', 'live_drift', + 'live_unresolved', 'json_decode_failures')} + else: + # Verify mode proves stability more strongly: exact equality with the + # pinned RESULT.json below, which was written under the double + # enumeration. Skip the second full pass to keep the replay within its + # command budget. + stable = True + checks = controls(ledger, stable) + expected = {'result': 'ValueError', + 'message': 'Pinned inherited source changed: scripts/exclusion_circuit.py'} + require(ledger['skip_clones_reproduction'] == expected, + 'skip-clones reproduction differs: ' + json.dumps(ledger['skip_clones_reproduction'])) + if write: + RESULT.write_bytes(json.dumps({'ledger': ledger, 'controls': checks}, + indent=1, sort_keys=True).encode('utf-8')) + else: + require(RESULT.is_file(), 'RESULT.json missing; run with --write first') + saved = json.loads(RESULT.read_bytes()) + require(saved == {'ledger': ledger, 'controls': checks}, + 'RESULT.json differs from recomputation') + counts = ledger['counts'] + print(f'PASS_LIVE_PIN_DRIFT_AUDIT pins={ledger["pins_seen"]} manifests={ledger["manifests_seen"]} ' + f'L(match={counts["L"]["match"]},drift={counts["L"]["drift"]},' + f'unresolved={counts["L"]["unresolved"]},ignored={counts["L"]["ignored"]}) ' + f'R-input(match={counts["R-input"]["match"]},drift={counts["R-input"]["drift"]},' + f'unresolved={counts["R-input"]["unresolved"]},ignored={counts["R-input"]["ignored"]}) ' + f'R-prov(match={counts["R-provenance"]["match"]},drift={counts["R-provenance"]["drift"]},' + f'unresolved={counts["R-provenance"]["unresolved"]},ignored={counts["R-provenance"]["ignored"]}) ' + f'P(match={counts["P"]["match"]},drift={counts["P"]["drift"]},' + f'unresolved={counts["P"]["unresolved"]},ignored={counts["P"]["ignored"]}) ' + f'live_drift_paths={len(ledger["drift_provenance"])} controls={len(checks)} ' + f'skip_clones=ValueError') + + +if __name__ == '__main__': + main()