diff --git a/poetry.lock b/poetry.lock index e52b4913..4dc94439 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 2.3.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.1.1 and should not be changed by hand. [[package]] name = "babel" @@ -266,14 +266,14 @@ cache = ["platformdirs"] [[package]] name = "mkdocs-tacc" -version = "1.0.4" +version = "1.0.5rc2" description = "TACC-specific MkDocs theme" optional = false python-versions = "<3.13,>=3.10" groups = ["main"] files = [ - {file = "mkdocs_tacc-1.0.4-py3-none-any.whl", hash = "sha256:1029eafd35b9996e19fb560aae9d1174d4262e1e3a3c3c5ed3518f7d5cd0a16a"}, - {file = "mkdocs_tacc-1.0.4.tar.gz", hash = "sha256:9945a00aeb67ca27609d7a15e63e6495fe4bc404af1ac8ac4731507a814470db"}, + {file = "mkdocs_tacc-1.0.5rc2-py3-none-any.whl", hash = "sha256:6e5555d0235c5489d2a61c26f771b9007d5ec67e9df2ef5e9db61538192b5f19"}, + {file = "mkdocs_tacc-1.0.5rc2.tar.gz", hash = "sha256:8aeb9d126402f9cae3b88a29d4096ad3685c904acab84615f0cf6da42c8ed8c3"}, ] [package.dependencies] @@ -490,4 +490,4 @@ watchmedo = ["PyYAML (>=3.10)"] [metadata] lock-version = "2.1" python-versions = ">=3.10,<3.13" -content-hash = "2a74ac71807eeda0d921aa985de7c7e25ca34ff184fb34822adff68e04f8d8fa" +content-hash = "721e4490e199be94d14bb595e631c8080c0740607254ec9ff4b1b8d532e2282d" diff --git a/pyproject.toml b/pyproject.toml index 3db45d45..56dbb5af 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,7 +19,7 @@ maintainers = [ readme = "README.md" requires-python = ">=3.10,<3.13" dependencies = [ - "mkdocs-tacc[all] (>=1.0.4,<2.0.0)", + "mkdocs-tacc[all] (>=1.0.5rc2,<2.0.0)", "mkdocs-exclude-search (>=0.6.6,<0.7.0)", "mkdocs-include-markdown-plugin (>=5.1.0,<6.0.0)", ] diff --git a/requirements.txt b/requirements.txt index b6fbf2e3..8c2bc6a1 100644 --- a/requirements.txt +++ b/requirements.txt @@ -115,9 +115,9 @@ mkdocs-exclude-search==0.6.6 ; python_version >= "3.10" and python_version < "3. mkdocs-include-markdown-plugin==5.1.0 ; python_version >= "3.10" and python_version < "3.13" \ --hash=sha256:4a1b8d79a0e1b6fd357ca8013a6d1701c755ada4acb74ee97b0642d1afe6756e \ --hash=sha256:e9ca188ab1d86f5fc4a6b96ce8c85acf6e25f114897868041056ec7945f29f65 -mkdocs-tacc==1.0.4 ; python_version >= "3.10" and python_version < "3.13" \ - --hash=sha256:1029eafd35b9996e19fb560aae9d1174d4262e1e3a3c3c5ed3518f7d5cd0a16a \ - --hash=sha256:9945a00aeb67ca27609d7a15e63e6495fe4bc404af1ac8ac4731507a814470db +mkdocs-tacc==1.0.5rc2 ; python_version >= "3.10" and python_version < "3.13" \ + --hash=sha256:6e5555d0235c5489d2a61c26f771b9007d5ec67e9df2ef5e9db61538192b5f19 \ + --hash=sha256:8aeb9d126402f9cae3b88a29d4096ad3685c904acab84615f0cf6da42c8ed8c3 mkdocs==1.4.3 ; python_version >= "3.10" and python_version < "3.13" \ --hash=sha256:5955093bbd4dd2e9403c5afaf57324ad8b04f16886512a3ee6ef828956481c57 \ --hash=sha256:6ee46d309bda331aac915cd24aab882c179a933bd9e77b80ce7d2eaaa3f689dd diff --git a/user-guide/account-help.md b/user-guide/account-help.md index bc68aea9..0342267b 100644 --- a/user-guide/account-help.md +++ b/user-guide/account-help.md @@ -19,7 +19,7 @@ There are multiple reasons you would either want to or be required to [update yo 3. Your citizenship changes. 4. You receive an email from TACC requiring an annual profile update. -It's possible the policies regarding email domains and Institutions have changed since the last time you either created your account or updated your profile, so you may want to review the [User Account Registration guide](https://designsafe-ci.org/user-guide/#user-account-registration) for the current guidance. +It's possible the policies regarding email domains and Institutions have changed since the last time you either created your account or updated your profile, so you may want to review the [User Account Registration guide](/user-guide/#user-account-registration) for the current guidance. ## Additional Account Resources diff --git a/user-guide/css/tacc/mkdocs-tacc.css b/user-guide/css/tacc/mkdocs-tacc.css index 3a76ac31..aefd010f 100644 --- a/user-guide/css/tacc/mkdocs-tacc.css +++ b/user-guide/css/tacc/mkdocs-tacc.css @@ -11,6 +11,7 @@ .wy-side-nav-search .nav-name { font-weight: var(--medium); color: #565656; + text-transform: uppercase; } /* To give logo more horizontal space */ .wy-side-nav-search > a { diff --git a/user-guide/curating/guides.md b/user-guide/curating/guides.md index e5bba5ae..ac49f2d8 100644 --- a/user-guide/curating/guides.md +++ b/user-guide/curating/guides.md @@ -493,7 +493,7 @@ In addition, the release must include a README file with detailed instructions o Failure to adequately describe your software with these files may result in removal of your publication. -[Read about best practices for creating CodeMeta and README files.](https://www.designsafe-ci.org/user-guide/curating/bestpractices/#research-software) +[Read about best practices for creating CodeMeta and README files.](/user-guide/curating/bestpractices/#research-software) After adding these files, create a new release. diff --git a/user-guide/datadepotrepo/resources.md b/user-guide/datadepotrepo/resources.md index aab24f25..ede4f50a 100644 --- a/user-guide/datadepotrepo/resources.md +++ b/user-guide/datadepotrepo/resources.md @@ -1,11 +1,11 @@ # Resources for Users -!!! caution "Content Undecided" +!!! warning "Content Undecided" Much of this page is incomplete. We might not use this page. ## Frequently Asked Questions -!!! caution "Content Undefined" +!!! warning "Content Undefined" Should this introduce some F.A.Q. and/or link to it? ## Data Management Plan @@ -14,12 +14,12 @@ Depositing your data and other resources such as documentation and research soft ## Data and Intellectual Property -!!! caution "Content Undefined" +!!! warning "Content Undefined" What content belongs here? ## Support and Contact Information -!!! caution "Content Undefined" +!!! warning "Content Undefined" Should this introduce the Support and Contact Information and/or link to it? ## DesignSafe Office Hours @@ -37,19 +37,19 @@ CONVERGE has a series of [check sheets](https://converge.colorado.edu/resources/ In addition, we suggest that users look into the [Data Curation Primers](https://datacurationnetwork.org/outputs/data-curation-primers/) from the Data Curation Network, which are "peer-reviewed, living documents that detail a specific subject, disciplinary area or curation task, and that can be used as a guidelines to curate research data. The primers include curation practices for documenting data types that while not open or recommended, are very established in the academic fields surrounding Natural Hazards research such as Matlab and Microsoft Excel. -!!! caution "Needs Review" +!!! warning "Needs Review" How to introduce this random link? [https://www.copyright.gov/circs/circ33.pdf](https://www.copyright.gov/circs/circ33.pdf)  ## Exemplary Datasets -!!! caution "Needs Review" +!!! warning "Needs Review" "Need to review this list now." — M.E. Below are examples of good organization and description for different dataset types: -!!! caution "Formatting Uncertain" +!!! warning "Formatting Uncertain" Should this be a nested list, a table, sub-headings and lists? Is it supposed to be [the user guide dictionaries](/user-guide/dictionary/)? * Experimental diff --git a/user-guide/deleted.md b/user-guide/deleted.md index 700bde39..ed2ec745 100644 --- a/user-guide/deleted.md +++ b/user-guide/deleted.md @@ -1,5 +1,5 @@ !!! attention "This page has been deleted." Please use navigation panel or links below to find other content. -!!! caution "Update bookmarks and links." +!!! danger "Update bookmarks and links." This page is now temporary, unmaintained, and will be deleted. diff --git a/user-guide/how-to-cite.md b/user-guide/how-to-cite.md index 2aa332d7..dffcb273 100644 --- a/user-guide/how-to-cite.md +++ b/user-guide/how-to-cite.md @@ -8,7 +8,7 @@ Rathje, E., Dawson, C. Padgett, J.E., Pinelli, J.-P., Stanzione, D., Adair, A., ## Additional Citation Information -If you receive HPC allocations for use in your computational research, in addition to citing DesignSafe per the marker paper please use the following acknowledgement. We also encourage you to curate and publish simulation data results using the [Simulation Data Model](https://www.designsafe-ci.org/user-guide/curating/guides/#simulation). +If you receive HPC allocations for use in your computational research, in addition to citing DesignSafe per the marker paper please use the following acknowledgement. We also encourage you to curate and publish simulation data results using the [Simulation Data Model](/user-guide/curating/guides/#simulation). The authors acknowledge the Texas Advanced Computing Center (TACC) at The University of Texas at Austin for providing computational resources that have contributed to the research results reported within this paper. URL: http://www.tacc.utexas.edu diff --git a/user-guide/redirect.md b/user-guide/redirect.md index d3c0c13a..c9987e40 100644 --- a/user-guide/redirect.md +++ b/user-guide/redirect.md @@ -1,5 +1,5 @@ !!! attention "This page has moved." Please use navigation panel or any links below to find the content. -!!! caution "Update bookmarks and links." +!!! danger "Update bookmarks and links." This page is now temporary, unmaintained, and will be deleted. diff --git a/user-guide/tools/advanced/dsfaq.md b/user-guide/tools/advanced/dsfaq.md index 36c1a34f..8baca4e4 100644 --- a/user-guide/tools/advanced/dsfaq.md +++ b/user-guide/tools/advanced/dsfaq.md @@ -166,7 +166,7 @@ The Jupyter Notebook is a web application that allows you to create and share do /// /// details | What do people do with Jupyter? -Many people use Jupyter in a similar fashion as they use MATLAB to analyze and plot their data. We will be sharing example Jupyter Notebooks soon that you can copy into your My Data and customize for your research. We also provide [Jupyter training](https://designsafe-ci.org/user-guide/tools/jupyterhub/). +Many people use Jupyter in a similar fashion as they use MATLAB to analyze and plot their data. We will be sharing example Jupyter Notebooks soon that you can copy into your My Data and customize for your research. We also provide [Jupyter training](/user-guide/tools/jupyterhub/). /// diff --git a/user-guide/usecases/README.md b/user-guide/usecases/README.md index 8b4f9753..ee2ec5ea 100644 --- a/user-guide/usecases/README.md +++ b/user-guide/usecases/README.md @@ -1,6 +1,6 @@ # DesignSafe Use Cases -How to contribute to [DesignSafe Use Cases](https://designsafe-ci.org/user-guide/usecases/overview/). +How to contribute to [DesignSafe Use Cases](/user-guide/usecases/overview/). ## A Guide to Adding Your Use Case Project