Issues

• cleanData() crashes when gene_struct has no variant columns

  JRaviLab/amRdata#67 · Filter by author eboyer221 opened on Sep 21, 2026

• Add clear session?

  JRaviLab/amRdata#64 · Filter by author jananiravi opened on Sep 18, 2026
  

• downloads HMMs multiple times

  JRaviLab/amRdata#62 · Filter by author jananiravi opened on Sep 18, 2026
  

• revisit vignette

  JRaviLab/amRdata#61 · Filter by author jananiravi opened on Sep 18, 2026
  

• add run docker error when runDataProcessing fails

  JRaviLab/amRdata#58 · Filter by author jananiravi opened on Sep 18, 2026
  1

  

• add successfully loaded/installed msg

  JRaviLab/amRdata#57 · Filter by author jananiravi opened on Sep 18, 2026
  

• add minimum requirements

  JRaviLab/amRdata#56 · Filter by author jananiravi opened on Sep 18, 2026
  

• HMMER thresholding

  enhancement
  JRaviLab/amRdata#50 · Filter by author AbhirupaGhosh opened on Sep 4, 2026
  

• Modify runDataProcessing() manifest detection

  Bug

  JRaviLab/amRdata#49 · Filter by author AbhirupaGhosh opened on Sep 3, 2026
  

• Add things to manifest (not priority)

  documentationenhancement
  Feature

  JRaviLab/amRdata#48 · Filter by author AbhirupaGhosh opened on Aug 20, 2026
  

• [BVBRC] pseudogene/partial_cds annotation gap for genomes

  bug
  JRaviLab/amRdata#39 · Filter by author jananiravi opened on Jul 30, 2026
  2

  

• experimental hub

  JRaviLab/amRdata#23 · Filter by author jananiravi opened on Apr 24, 2026
  

• docker dependency

  JRaviLab/amRdata#22 · Filter by author jananiravi opened on Apr 24, 2026
  

• I can run this in the morning, but I think DuckDB requires single quotes for these strings to be interpreted as strings, and if we're gluing this into a command then double quotes might not work properly. Will check.

  JRaviLab/amRdata#16 · Filter by author AbhirupaGhosh opened on Mar 12, 2026