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69 lines (68 loc) · 2.03 KB
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# Generated by roxygen2: do not edit by hand
S3method(grid.draw,aaplot)
S3method(print,aaplot)
export(BSseq)
export(SamepleBedFiles)
export(SamepleTxtFiles)
export(SampleFileFolder)
export(assay)
export(assays)
export(bmData)
export(getBaseModificationDf)
export(makeBSseqData)
export(makebmDataFromData)
export(makebmDataFromFiles)
export(plotBaseModificationProf)
exportClasses(bmData)
exportMethods(getBaseModificationDf)
exportMethods(makebmDataFromData)
import(ggplot2)
importClassesFrom(SummarizedExperiment,RangedSummarizedExperiment)
importFrom(Biostrings,DNAStringSet)
importFrom(ChIPseeker,readPeakFile)
importFrom(DSS,makeBSseqData)
importFrom(GenomicRanges,"mcols<-")
importFrom(GenomicRanges,"strand<-")
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,granges)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,strand)
importFrom(IRanges,IRanges)
importFrom(S4Vectors,SimpleList)
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(aplot,as.patchwork)
importFrom(aplot,insert_bottom)
importFrom(aplot,plot_list)
importFrom(aplot,xlim2)
importFrom(bsseq,BSseq)
importFrom(bsseq,pData)
importFrom(data.table,fread)
importFrom(dplyr,arrange)
importFrom(ggbio,autoplot)
importFrom(gginnards,move_layers)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,theme_void)
importFrom(ggplotify,as.ggplot)
importFrom(ggplotify,grid2grob)
importFrom(grid,grid.draw)
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(patchwork,plot_layout)
importFrom(patchwork,plot_spacer)
importFrom(scales,rescale)
importFrom(tidyr,gather)
importFrom(tidyselect,all_of)
importFrom(utils,file_test)
importFrom(utils,getFromNamespace)