From 18d96678920cd294ce470e51ab168a4597b996ee Mon Sep 17 00:00:00 2001 From: WardDeb Date: Sun, 1 Nov 2026 17:33:09 +0100 Subject: [PATCH 1/6] update tests to match classifiers, try trusted publishing since zizmor keeps me from comitting otherwise --- .github/workflows/test_pytest.yml | 4 +-- .github/workflows/wheels-preview.yml | 10 +++--- .github/workflows/wheels.yml | 10 +++--- pyproject.toml | 22 ++++++++++--- scripts/check_version_sync.py | 46 +++++++++++++++++++++++++++- 5 files changed, 75 insertions(+), 17 deletions(-) diff --git a/.github/workflows/test_pytest.yml b/.github/workflows/test_pytest.yml index f262d7f48a..d5cb3819e5 100644 --- a/.github/workflows/test_pytest.yml +++ b/.github/workflows/test_pytest.yml @@ -34,7 +34,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - pixi-env: [py312, py313, py314] + pixi-env: [py312, py313, py314, py315, py314t, py315t] steps: - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: @@ -55,7 +55,7 @@ jobs: runs-on: macOS-latest strategy: matrix: - pixi-env: [py312, py313, py314] + pixi-env: [py312, py313, py314, py315, py314t, py315t] steps: - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: diff --git a/.github/workflows/wheels-preview.yml b/.github/workflows/wheels-preview.yml index 0cde2a656c..edd07a82cf 100644 --- a/.github/workflows/wheels-preview.yml +++ b/.github/workflows/wheels-preview.yml @@ -44,7 +44,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist --find-interpreter + args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t manylinux: 2_28 before-script-linux: | set -ex @@ -101,7 +101,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist --find-interpreter + args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t manylinux: musllinux_1_2 before-script-linux: | apt-get update @@ -149,7 +149,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist --find-interpreter + args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t - name: Upload wheels uses: actions/upload-artifact@cf430e030ddbb5b0abf93d22962f4752f3646cd9 # v7.0.2 with: @@ -194,6 +194,9 @@ jobs: name: Publish preview to TestPyPI runs-on: ubuntu-latest needs: [linux, musllinux, macos, sdist] + environment: testpypi + permissions: + id-token: write steps: - uses: actions/download-artifact@9000827ccba6bdab643e8b6fd33ac0654aef8333 # v8.0.2 with: @@ -204,6 +207,5 @@ jobs: uses: pypa/gh-action-pypi-publish@7245906fb61fa33a13554f9d5fb856fe61758086 # v1.14.3 with: repository-url: https://test.pypi.org/legacy/ - password: ${{ secrets.TESTPYPI_API_TOKEN }} packages-dir: dist skip-existing: true diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml index 4fe1d4f526..90aaa6641f 100644 --- a/.github/workflows/wheels.yml +++ b/.github/workflows/wheels.yml @@ -29,8 +29,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist --find-interpreter - # sccache: ${{ !startsWith(github.ref, 'refs/tags/') }} + args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t manylinux: 2_28 before-script-linux: | set -ex @@ -87,8 +86,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist --find-interpreter - # sccache: ${{ !startsWith(github.ref, 'refs/tags/') }} + args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t manylinux: musllinux_1_2 before-script-linux: | apt-get update @@ -122,7 +120,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist --find-interpreter + args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t - name: Upload wheels uses: actions/upload-artifact@cf430e030ddbb5b0abf93d22962f4752f3646cd9 # v7.0.2 with: @@ -151,6 +149,7 @@ jobs: runs-on: ubuntu-latest if: ${{ startsWith(github.ref, 'refs/tags/') || github.event_name == 'workflow_dispatch' }} needs: [linux, musllinux, macos, sdist] + environment: pypi permissions: id-token: write contents: write @@ -169,6 +168,5 @@ jobs: if: ${{ startsWith(github.ref, 'refs/tags/') }} uses: pypa/gh-action-pypi-publish@7245906fb61fa33a13554f9d5fb856fe61758086 # v1.14.3 with: - password: ${{ secrets.PYPI_API_TOKEN }} packages-dir: dist skip-existing: true diff --git a/pyproject.toml b/pyproject.toml index 56d35d64d7..f1b596bb6b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -49,7 +49,13 @@ description = "Useful tools for exploring deep sequencing data." license = {file = "LICENSE.txt"} classifiers = [ "Intended Audience :: Science/Research", - "Topic :: Scientific/Engineering :: Bio-Informatics" + "Topic :: Scientific/Engineering :: Bio-Informatics", + # Supported Python versions: + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", + "Programming Language :: Python :: 3.14", + "Programming Language :: Python :: 3.15", + "Programming Language :: Python :: Free Threading :: 1 - Unstable" ] readme = "README.md" [project.optional-dependencies] @@ -75,9 +81,6 @@ repository = "https://github.com/deeptools/deepTools" [tool.setuptools] packages = ["deeptools"] -[tool.ruff] -target-version = "py312" - [tool.ruff.lint] ignore = [ "N999", #invalid module name @@ -141,6 +144,14 @@ python = "3.12.*" python = "3.13.*" [tool.pixi.feature.py314.dependencies] python = "3.14.*" +[tool.pixi.feature.py315.dependencies] +python = "3.15.*" +[tool.pixi.feature.py314t.dependencies] +python = "3.14.*" +python-freethreading = "*" +[tool.pixi.feature.py315t.dependencies] +python = "3.15.*" +python-freethreading = "*" [tool.pixi.feature.ess] platforms = ["linux-64"] [tool.pixi.feature.ess.dependencies] @@ -152,4 +163,7 @@ python = "3.*" py312 = ["py312"] py313 = ["py313"] py314 = ["py314"] +py315 = ["py315"] +py314t = ["py314t"] +py315t = ["py315t"] ess = { features = ["ess"], no-default-feature = true } diff --git a/scripts/check_version_sync.py b/scripts/check_version_sync.py index 5ff64a70d2..59e835e4d0 100644 --- a/scripts/check_version_sync.py +++ b/scripts/check_version_sync.py @@ -99,9 +99,49 @@ def galaxy_tool_version() -> str: return match.group(1) +def _grep(path: str, pattern: str) -> list[str]: + return re.findall(pattern, (REPO_ROOT / path).read_text(), re.MULTILINE) + + +def python_version_mismatches() -> dict[str, tuple[object, object]]: + """Check every hardcoded Python version against the pyproject.toml classifiers.""" + project = tomllib.loads((REPO_ROOT / "pyproject.toml").read_text()) + classifiers = project["project"]["classifiers"] + versions = [c.rsplit(" ", 1)[1] for c in classifiers + if re.fullmatch(r"Programming Language :: Python :: 3\.\d+", c)] + if not versions: + sys.exit("pyproject.toml: no 'Programming Language :: Python :: 3.X' classifiers found") + if any(c.startswith("Programming Language :: Python :: Free Threading") for c in classifiers): + versions += [f"{v}t" for v in versions if _version_tuple(v) >= (3, 14)] + envs = [f"py{v.replace('.', '')}" for v in versions] + interpreters = [f"python{v}" for v in versions] + + pixi_envs = [name for name in project["tool"]["pixi"]["environments"] if name.startswith("py3")] + rtd = _grep(".readthedocs.yaml", r'^\s*python:\s*"([\d.]+)"') + checks = { + "pyproject.toml requires-python": (f">= {versions[0]}", project["project"]["requires-python"]), + "pyproject.toml pixi environments": (envs, pixi_envs), + "test_planemo.yml python-version (lowest)": ( + [versions[0]], + _grep(".github/workflows/test_planemo.yml", r'python-version:\s*"([\d.]+)"'), + ), + ".readthedocs.yaml python (any supported)": (True, bool(rtd) and rtd[0] in versions), + } + # Files with several matrices / build steps: every one of them must match. + matrices = [[e.strip() for e in m.split(",")] + for m in _grep(".github/workflows/test_pytest.yml", r"pixi-env:\s*\[([^\]]*)\]")] + checks["test_pytest.yml pixi-env matrices"] = ([envs] * max(len(matrices), 1), matrices) + for workflow in ("wheels.yml", "wheels-preview.yml"): + # a wheel build without `-i` (e.g. --find-interpreter) yields an empty list + builds = [args.split() for args in + _grep(f".github/workflows/{workflow}", r"^\s*args:\s*--release(?:.*?\s-i\s+(.*))?.*$")] + checks[f"{workflow} maturin -i"] = ([interpreters] * max(len(builds), 1), builds) + return {name: pair for name, pair in checks.items() if pair[0] != pair[1]} + + def main() -> None: cargo_version = cargo_rust_version() - mismatches: dict[str, tuple[str, str]] = {} + mismatches: dict[str, tuple[object, object]] = {} pixi_version = pixi_rust_version() if pixi_version != cargo_version: @@ -117,6 +157,10 @@ def main() -> None: elif rtd_version != "latest" and _version_tuple(rtd_version) < _version_tuple(cargo_version): mismatches["rust: .readthedocs.yaml build.tools.rust"] = (f">= {cargo_version}", rtd_version) + mismatches.update( + {f"python: {name}": pair for name, pair in python_version_mismatches().items()} + ) + pkg_version = deeptools_version() galaxy_version = galaxy_tool_version() if galaxy_version != pkg_version: From 0b51770966b6f3a60fa7611742719e6d9dd0d878 Mon Sep 17 00:00:00 2001 From: WardDeb Date: Sun, 1 Nov 2026 17:37:18 +0100 Subject: [PATCH 2/6] update lock --- pixi.lock | 7367 ++++++++++++++++++++++++++++++++++++++++++++++++++++- 1 file changed, 7245 insertions(+), 122 deletions(-) diff --git a/pixi.lock b/pixi.lock index 9b232d2fa6..beab589298 100644 --- a/pixi.lock +++ b/pixi.lock @@ -1,8 +1,21 @@ version: 7 platforms: - name: linux-64 + virtual-packages: + - __unix=0=0 + - __linux=4.18 + - __glibc=2.28 + - __archspec=0=x86_64 - name: osx-64 + virtual-packages: + - __unix=0=0 + - __osx=13.0 + - __archspec=0=x86_64 - name: osx-arm64 + virtual-packages: + - __unix=0=0 + - __osx=13.0 + - __archspec=0=m1 environments: default: channels: @@ -2721,6 +2734,1965 @@ environments: - pypi: https://files.pythonhosted.org/packages/fd/e1/3542a9cb596cadd76fcef413f19c79216e002623158befe6daa03dbfa88c/contourpy-1.3.3-cp314-cp314-macosx_11_0_arm64.whl - pypi: https://files.pythonhosted.org/packages/fe/1f/e6a712e3b47cad4a40600134105ed193cb773f618a42eb7ba323cb812cc0/ruff-0.16.8-py3-none-macosx_11_0_arm64.whl - pypi: https://files.pythonhosted.org/packages/ff/9a/9afaade874b2fa6c752c36f1548f718b5b83af81ed9b76628329dab81c1b/rfc3986-2.0.0-py2.py3-none-any.whl + py314t: + channels: + - url: https://conda.anaconda.org/conda-forge/ + - url: https://conda.anaconda.org/bioconda/ + indexes: + - https://pypi.org/simple + packages: + linux-64: + - 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license: MIT - license_family: MIT - purls: [] - run_exports: - weak: - - libdeflate >=1.26,<1.27.0a0 - size: 71243 - timestamp: 1787442867547 - conda: https://conda.anaconda.org/conda-forge/osx-64/libedit-3.1.20250104-pl5321ha958ccf_0.conda sha256: 6cc49785940a99e6a6b8c6edbb15f44c2dd6c789d9c283e5ee7bdfedd50b4cd6 md5: 1f4ed31220402fcddc083b4bff406868 From 7b726c9b6d3ba8c5286561e0ae1ecb759ddd24e2 Mon Sep 17 00:00:00 2001 From: WardDeb Date: Sun, 1 Nov 2026 18:18:20 +0100 Subject: [PATCH 4/6] drop 3.15/3.15t, version check in pre-commit, drop t in macOS --- .github/workflows/test_pytest.yml | 6 +- .github/workflows/wheels-preview.yml | 6 +- .github/workflows/wheels.yml | 6 +- .pre-commit-config.yaml | 4 +- pixi.lock | 3305 +------------------------- pyproject.toml | 8 - 6 files changed, 98 insertions(+), 3237 deletions(-) diff --git a/.github/workflows/test_pytest.yml b/.github/workflows/test_pytest.yml index d5cb3819e5..693d5fc001 100644 --- a/.github/workflows/test_pytest.yml +++ b/.github/workflows/test_pytest.yml @@ -33,8 +33,9 @@ jobs: name: Test on Linux runs-on: ubuntu-latest strategy: + fail-fast: false matrix: - pixi-env: [py312, py313, py314, py315, py314t, py315t] + pixi-env: [py312, py313, py314, py314t] steps: - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: @@ -54,8 +55,9 @@ jobs: name: Test on OSX runs-on: macOS-latest strategy: + fail-fast: false matrix: - pixi-env: [py312, py313, py314, py315, py314t, py315t] + pixi-env: [py312, py313, py314, py314t] steps: - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: diff --git a/.github/workflows/wheels-preview.yml b/.github/workflows/wheels-preview.yml index edd07a82cf..b9af713f46 100644 --- a/.github/workflows/wheels-preview.yml +++ b/.github/workflows/wheels-preview.yml @@ -44,7 +44,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t + args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t manylinux: 2_28 before-script-linux: | set -ex @@ -101,7 +101,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t + args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t manylinux: musllinux_1_2 before-script-linux: | apt-get update @@ -149,7 +149,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t + args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t - name: Upload wheels uses: actions/upload-artifact@cf430e030ddbb5b0abf93d22962f4752f3646cd9 # v7.0.2 with: diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml index 90aaa6641f..d699587185 100644 --- a/.github/workflows/wheels.yml +++ b/.github/workflows/wheels.yml @@ -29,7 +29,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t + args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t manylinux: 2_28 before-script-linux: | set -ex @@ -86,7 +86,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t + args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t manylinux: musllinux_1_2 before-script-linux: | apt-get update @@ -120,7 +120,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.15 python3.14t python3.15t + args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t - name: Upload wheels uses: actions/upload-artifact@cf430e030ddbb5b0abf93d22962f4752f3646cd9 # v7.0.2 with: diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 178bee8eba..9d14fe8b93 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -6,10 +6,10 @@ repos: - repo: local hooks: - id: check-version-sync - name: check Rust versions (docs - toml) and deeptools versions (toml - galaxy) to stay in sync + name: check Rust, Python and deeptools versions to stay in sync entry: python scripts/check_version_sync.py language: system - 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- myst-nb>=1.2.0 ; extra == 'doc' - - pooch ; extra == 'doc' - - jupyterlite-sphinx>=0.19.1 ; extra == 'doc' - - jupyterlite-pyodide-kernel ; extra == 'doc' - - linkify-it-py ; extra == 'doc' - - tabulate ; extra == 'doc' - - click<8.3.0 ; extra == 'dev' - - spin ; extra == 'dev' - - mypy==1.19.1 ; extra == 'dev' - - pyrefly==0.63.0 ; extra == 'dev' - - typing-extensions ; extra == 'dev' - - types-psutil ; extra == 'dev' - - pycodestyle ; extra == 'dev' - - ruff>=0.12.0 ; extra == 'dev' - - cython-lint>=0.12.2 ; extra == 'dev' - requires_python: '>=3.12' - pypi: https://files.pythonhosted.org/packages/fc/57/527910c455b5ec62f6871bef45d4f79fea16cb8c966ba0d4a07f0339ddc4/propcache-0.5.4-cp314-cp314t-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl name: propcache version: 0.5.4 diff --git a/pyproject.toml b/pyproject.toml index f1b596bb6b..fad0fdbfda 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -54,7 +54,6 @@ classifiers = [ "Programming Language :: Python :: 3.12", "Programming Language :: Python :: 3.13", "Programming Language :: Python :: 3.14", - "Programming Language :: Python :: 3.15", "Programming Language :: Python :: Free Threading :: 1 - Unstable" ] readme = "README.md" @@ -144,14 +143,9 @@ python = "3.12.*" python = "3.13.*" [tool.pixi.feature.py314.dependencies] python = "3.14.*" -[tool.pixi.feature.py315.dependencies] -python = "3.15.*" [tool.pixi.feature.py314t.dependencies] python = "3.14.*" python-freethreading = "*" -[tool.pixi.feature.py315t.dependencies] -python = "3.15.*" -python-freethreading = "*" [tool.pixi.feature.ess] platforms = ["linux-64"] [tool.pixi.feature.ess.dependencies] @@ -163,7 +157,5 @@ python = "3.*" py312 = ["py312"] py313 = ["py313"] py314 = ["py314"] -py315 = ["py315"] py314t = ["py314t"] -py315t = ["py315t"] ess = { features = ["ess"], no-default-feature = true } From e23375c63b653999622b831c100c003e0c6f49b9 Mon Sep 17 00:00:00 2001 From: WardDeb Date: Sun, 1 Nov 2026 18:24:45 +0100 Subject: [PATCH 5/6] drop 3.14 freethread too --- .github/workflows/test_pytest.yml | 4 ++-- .github/workflows/wheels-preview.yml | 6 +++--- .github/workflows/wheels.yml | 6 +++--- pyproject.toml | 7 +------ 4 files changed, 9 insertions(+), 14 deletions(-) diff --git a/.github/workflows/test_pytest.yml b/.github/workflows/test_pytest.yml index 693d5fc001..47442c5086 100644 --- a/.github/workflows/test_pytest.yml +++ b/.github/workflows/test_pytest.yml @@ -35,7 +35,7 @@ jobs: strategy: fail-fast: false matrix: - pixi-env: [py312, py313, py314, py314t] + pixi-env: [py312, py313, py314] steps: - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: @@ -57,7 +57,7 @@ jobs: strategy: fail-fast: false matrix: - pixi-env: [py312, py313, py314, py314t] + pixi-env: [py312, py313, py314] steps: - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 with: diff --git a/.github/workflows/wheels-preview.yml b/.github/workflows/wheels-preview.yml index b9af713f46..a6a039901f 100644 --- a/.github/workflows/wheels-preview.yml +++ b/.github/workflows/wheels-preview.yml @@ -44,7 +44,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t + args: --release --out dist -i python3.12 python3.13 python3.14 manylinux: 2_28 before-script-linux: | set -ex @@ -101,7 +101,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t + args: --release --out dist -i python3.12 python3.13 python3.14 manylinux: musllinux_1_2 before-script-linux: | apt-get update @@ -149,7 +149,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t + args: --release --out dist -i python3.12 python3.13 python3.14 - name: Upload wheels uses: actions/upload-artifact@cf430e030ddbb5b0abf93d22962f4752f3646cd9 # v7.0.2 with: diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml index d699587185..2eeaf7ba54 100644 --- a/.github/workflows/wheels.yml +++ b/.github/workflows/wheels.yml @@ -29,7 +29,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t + args: --release --out dist -i python3.12 python3.13 python3.14 manylinux: 2_28 before-script-linux: | set -ex @@ -86,7 +86,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t + args: --release --out dist -i python3.12 python3.13 python3.14 manylinux: musllinux_1_2 before-script-linux: | apt-get update @@ -120,7 +120,7 @@ jobs: uses: PyO3/maturin-action@e83996d129638aa358a18fbd1dfb82f0b0fb5d3b # v1.51.0 with: target: ${{ matrix.platform.target }} - args: --release --out dist -i python3.12 python3.13 python3.14 python3.14t + args: --release --out dist -i python3.12 python3.13 python3.14 - name: Upload wheels uses: actions/upload-artifact@cf430e030ddbb5b0abf93d22962f4752f3646cd9 # v7.0.2 with: diff --git a/pyproject.toml b/pyproject.toml index fad0fdbfda..b66b43d00c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -53,8 +53,7 @@ classifiers = [ # Supported Python versions: "Programming Language :: Python :: 3.12", "Programming Language :: Python :: 3.13", - "Programming Language :: Python :: 3.14", - "Programming Language :: Python :: Free Threading :: 1 - Unstable" + "Programming Language :: Python :: 3.14" ] readme = "README.md" [project.optional-dependencies] @@ -143,9 +142,6 @@ python = "3.12.*" python = "3.13.*" [tool.pixi.feature.py314.dependencies] python = "3.14.*" -[tool.pixi.feature.py314t.dependencies] -python = "3.14.*" -python-freethreading = "*" [tool.pixi.feature.ess] platforms = ["linux-64"] [tool.pixi.feature.ess.dependencies] @@ -157,5 +153,4 @@ python = "3.*" py312 = ["py312"] py313 = ["py313"] py314 = ["py314"] -py314t = ["py314t"] ess = { features = ["ess"], no-default-feature = true } From 656a034646900dec07b2be57e0961565e3295dee Mon Sep 17 00:00:00 2001 From: WardDeb Date: Sun, 1 Nov 2026 18:26:48 +0100 Subject: [PATCH 6/6] lock with 14t dorp --- pixi.lock | 4046 +---------------------------------------------------- 1 file changed, 48 insertions(+), 3998 deletions(-) diff --git a/pixi.lock b/pixi.lock index 9845719a67..7c36f4bf6e 100644 --- a/pixi.lock +++ b/pixi.lock @@ -2734,665 +2734,6 @@ environments: - 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