diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml index eef68b8..2644ca2 100644 --- a/.github/workflows/main.yaml +++ b/.github/workflows/main.yaml @@ -1,63 +1,81 @@ -name: Build - +name: Test ShExJSG +env: + UV_VERSION: "0.7.13" on: push: + branches: + - main + pull_request: + workflow_dispatch: jobs: - update-requirements: + quality-checks: runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v2 - - uses: actions/setup-python@v2 - - uses: dschep/install-pipenv-action@v1 - - name: Update requirements - run: | - python -m pip install --upgrade pip - pip install pipenv-to-requirements - pipenv lock - pipenv_to_requirements - git add requirements*.txt - if [[ -n $(git status -s requirements*.txt) ]] - then - git config --local user.email "action@github.com" - git config --local user.name "GitHub Action" - git commit -m 'Automatically generated requirements' requirements*.txt - git push - fi - - - name: Update the ShExJ python module - run: | - pipenv install - NEWF=$(mktemp).py - pwd - ls -l ShExJSG/ShExJ.jsg - pipenv run generate_parser -nh -e -o $NEWF ShExJSG/ShExJ.jsg - echo DONE - if [[ `tail -n +4 ShExJSG/ShExJ.py | diff -w -q $NEWF -` ]] - then - mv $NEWF ShExJSG/ShExJ.py - echo "ShExJ.py was updated" - else - rm $NEWF - echo "ShExJ.py was not changed" - fi + - uses: actions/checkout@v6 + - name: Install uv + uses: astral-sh/setup-uv@v7 + with: + version: ${{ env.UV_VERSION }} + enable-cache: true + - uses: actions/setup-python@v6 + with: + python-version: 3.13 + - name: Install tox + run: python -m pip install tox + - name: Run codespell + run: tox -e codespell test: - needs: update-requirements - runs-on: ubuntu-latest + needs: + - quality-checks strategy: + fail-fast: false matrix: - python-version: [ 3.7, 3.8, 3.9, "3.10" ] + os: [ubuntu-latest, windows-latest] + python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] + defaults: + run: + shell: bash + + runs-on: ${{ matrix.os }} steps: - - uses: actions/checkout@v2 + - name: Check out repository + uses: actions/checkout@v6 + with: + fetch-depth: 0 + + - name: Install uv + uses: astral-sh/setup-uv@v7 + with: + version: ${{ env.UV_VERSION }} + enable-cache: true + cache-dependency-glob: "uv.lock" + python-version: ${{ matrix.python-version }} + + - name: Install dependencies + run: | + uv sync --group dev + + - name: Verify uv.lock is up-to-date + run: uv lock --check + + - name: Install pyshexc + run: uv pip install "pyshexc>=0.10.3" - - uses: actions/setup-python@v2 - with: - python-version: ${{ matrix.python-version }} + - name: Generate coverage results + # Set bash shell to fail correctly on Windows https://github.com/actions/runner-images/issues/6668 + shell: bash + run: | + uv run coverage run -m pytest + uv run coverage xml + uv run coverage report -m - - name: Run Tox - run: | - pip install tox - tox -e py + - name: Upload coverage report + uses: codecov/codecov-action@v6.0.0 + with: + name: codecov-results-${{ matrix.os }}-${{ matrix.python-version }} + token: ${{ secrets.CODECOV_TOKEN }} + file: coverage.xml + fail_ci_if_error: false \ No newline at end of file diff --git a/.github/workflows/pypi-publish.yaml b/.github/workflows/pypi-publish.yaml index 0471547..2c083d2 100644 --- a/.github/workflows/pypi-publish.yaml +++ b/.github/workflows/pypi-publish.yaml @@ -5,20 +5,76 @@ on: types: [created] jobs: - build-n-publish: - name: Build and publish Python 🐍 distributions 📦 to PyPI and TestPyPI + build: + name: Build distributions 📦 runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 - - uses: actions/setup-python@v2 - - name: Install dependencies and build dist package - run: | - python -m pip install --upgrade pip - pip install wheel - python setup.py bdist_wheel sdist - - name: Publish distribution 📦 to PyPI - uses: pypa/gh-action-pypi-publish@release/v1 + - uses: actions/checkout@v6 with: - user: __token__ - password: ${{ secrets.pypi_password }} + fetch-depth: 0 + fetch-tags: true + + - name: Fetch full git tags + run: git fetch --tags + + - name: Install uv + uses: astral-sh/setup-uv@v7 + + - name: Install Python 3.13 + run: uv python install 3.13 + + - name: Build + run: uv build + + - name: Upload dist artifact + uses: actions/upload-artifact@v7 + with: + name: dist + path: dist/ + + + publish-testpypi: + name: Publish to TestPyPI + needs: build + if: github.event.release.prerelease == true + runs-on: ubuntu-latest + + permissions: + id-token: write + + environment: testpypi + + steps: + - name: Download dist + uses: actions/download-artifact@v7 + with: + name: dist + path: dist/ + + - name: Publish to TestPyPI 📦 + uses: pypa/gh-action-pypi-publish@v1.14.0 + with: + repository-url: https://test.pypi.org/legacy/ + + + publish-pypi: + name: Publish to PyPI + needs: build + if: github.event.release.prerelease == false + runs-on: ubuntu-latest + + permissions: + id-token: write + + environment: pypi + + steps: + - name: Download dist + uses: actions/download-artifact@v7 + with: + name: dist + path: dist/ + + - name: Publish to PyPI 📦 + uses: pypa/gh-action-pypi-publish@v1.14.0 \ No newline at end of file diff --git a/Pipfile b/Pipfile deleted file mode 100644 index 44db2a6..0000000 --- a/Pipfile +++ /dev/null @@ -1,14 +0,0 @@ -[[source]] -name = "pypi" -url = "https://pypi.org/simple" -verify_ssl = true - -[dev-packages] -yadict_compare = "*" -requests = "*" -jsonasobj = ">=1.2.1" -rdflib-shim = "*" -pyshexc = "*" - -[packages] -PyJSG = ">=0.11.10" diff --git a/README.md b/README.md index 667dd29..36d06d5 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,7 @@ +This repository was originally developed by [Harold Solbrig](https://github.com/hsolbrig) and was kindly contributed +to the LinkML organization because of his retirement. All credit for the original development of this repository goes +to him. + # ShExJSG - Python representation of the ShEx AST(ish) specification. @@ -61,4 +65,14 @@ cd ShExJSG generate_parser ShExJ.jsg ``` -Then run all of the unit tests +Then run all tests: + +`uv run pytest` + +## Note for developers +The original way this library was developed created a circular dependency for the test environment, causing uv to fail +to resolve. The reason is that `ShExJSG` is a runtime dependency for `pyshexc`, while `pyshexc` is a dev dependency for +`ShExJSG`. The only way around this is to run the development install the following way after cloning: + +1. `uv sync` +2. `uv pip install "pyshexc>=0.10.3"` diff --git a/codecov.yml b/codecov.yml new file mode 100644 index 0000000..e91d49c --- /dev/null +++ b/codecov.yml @@ -0,0 +1,9 @@ +# https://docs.codecov.com/docs/codecov-yaml +coverage: + status: + project: + default: + informational: true + patch: + default: + informational: true diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..3b9d892 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,97 @@ +[build-system] +requires = ["hatchling", "uv-dynamic-versioning"] +build-backend = "hatchling.build" + +[project] +name = "ShExJSG" +description = "ShExJSG - Astract Syntax Tree Definition for the ShEx 2.0 language" +authors = [ + { name = "Harold Solbrig", email = "solbrig@jhu.edu" }, + { name = "Wouter-Michiel Vierdag", email = "michiel.vierdag@scverse.org" } +] +license = { text = "CC0 1.0 Universal" } +repository = "https://github.com/linkml/ShExJSG" +readme = "README.md" +keywords = [ + "shex", + "jsg", + "rdf", +] +classifiers = [ + "Development Status :: 4 - Beta", + "Environment :: Console", + "Intended Audience :: Developers", + "Topic :: Software Development :: Compilers", + "License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication", + "Programming Language :: Python :: 3 :: Only", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", + "Programming Language :: Python :: 3.14", +] +requires-python = ">=3.10" +dynamic = ["version"] +dependencies = [ + "pyjsg>=0.12.3", +] + +[tool.uv.sources] +shexjsg = { workspace = true } + +[tool.uv-dynamic-versioning] +vcs = "git" +style = "pep440" +fallback-version = "0.0.0" + +[tool.hatch.version] +source = "uv-dynamic-versioning" + +[tool.hatch.build.targets.wheel] +packages = ["ShExJSG"] + +[dependency-groups] +dev = [ + "yadict_compare", + "pytest", + "pytest-forked", + # "pyshexc>=0.10.3", does not resolve due to circular dependency, e.g. pyshexc needs shexjsg, see README.md + "rdflib-shim", + "coverage", + "requests", + "jsonasobj>=1.2.1", +] + +[tool.black] +line-length = 120 +target-version = ["py310", "py311", "py312", "py313", "py314"] + +[tool.codespell] +skip = [ + ".git", + "uv.lock", + "*.toml", +] + +[tool.tox] +requires = ["tox>=4"] +env_list = ["lint", "py{310,311,312,313}"] + +[tool.tox.env_run_base] +allowlist_externals = ["uv"] +deps = ["pytest"] +commands = [ + ["uv", "sync", "--all-extras", "--dev"], + ["uv", "run", "pytest", "{posargs}"], +] + +[tool.tox.env.codespell] +description = "Run spell checkers." +skip_install = true +deps = [ + "codespell", + "tomli", # required for getting config from pyproject.toml +] +commands = [ + ["codespell", "{posargs}"] +] \ No newline at end of file diff --git a/requirements-dev.txt b/requirements-dev.txt deleted file mode 100644 index e0713a5..0000000 --- a/requirements-dev.txt +++ /dev/null @@ -1,17 +0,0 @@ -################################################################################ -# This requirements file has been automatically generated from `Pipfile` with -# `pipenv-to-requirements` -# -# -# This has been done to maintain backward compatibility with tools and services -# that do not support `Pipfile` yet. -# -# Do NOT edit it directly, use `pipenv install [-d]` to modify `Pipfile` and -# `Pipfile.lock` and then regenerate `requirements*.txt`. -################################################################################ - -jsonasobj>=1.2.1 -pyshexc -rdflib-shim -requests -yadict-compare diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 17d7a90..0000000 --- a/requirements.txt +++ /dev/null @@ -1,13 +0,0 @@ -################################################################################ -# This requirements file has been automatically generated from `Pipfile` with -# `pipenv-to-requirements` -# -# -# This has been done to maintain backward compatibility with tools and services -# that do not support `Pipfile` yet. -# -# Do NOT edit it directly, use `pipenv install [-d]` to modify `Pipfile` and -# `Pipfile.lock` and then regenerate `requirements*.txt`. -################################################################################ - -pyjsg>=0.11.10 diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index ff5581c..0000000 --- a/setup.cfg +++ /dev/null @@ -1,31 +0,0 @@ -[metadata] -name = ShExJSG -url = https://github.com/hsolbrig/ShExJSG -license = CC0 1.0 Universal -author = Harold Solbrig -author_email = informatics@solbrig.us -summary = ShExJSG - Astract Syntax Tree for the ShEx 2.0 language -description = ShExJSG - Astract Syntax Tree Definition for the ShEx 2.0 language -classifier = - Development Status :: 4 - Beta - Environment :: Console - Intended Audience :: Developers - Topic :: Software Development :: Compilers - License :: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication - Programming Language :: Python :: 3 :: Only - Programming Language :: Python :: 3.6 - Programming Language :: Python :: 3.7 - Programming Language :: Python :: 3.8 - Programming Language :: Python :: 3.9 - Programming Language :: Python :: 3.10 -keywords = - shex - jsg - rdf - -[files] -packages = - ShExJSG - -[bdist_wheel] -universal = 1 diff --git a/setup.py b/setup.py deleted file mode 100644 index 91f5d23..0000000 --- a/setup.py +++ /dev/null @@ -1,11 +0,0 @@ -#!/usr/bin/env python - -from setuptools import setup - -NAME = 'ShExJSG' - -setup( - name=NAME, - setup_requires=['pbr'], - pbr=True, -) \ No newline at end of file diff --git a/tests/test_biolink_model.py b/tests/test_biolink_model.py index aa482a5..6b02da5 100644 --- a/tests/test_biolink_model.py +++ b/tests/test_biolink_model.py @@ -1,5 +1,6 @@ import os -import unittest + +import pytest from ShExJSG import ShExC, ShExJ from tests import input_data_dir, output_data_dir @@ -7,37 +8,22 @@ update_output = False - -class BioLinkShexCTestCase(unittest.TestCase): - def do_test(self, infile: str) -> None: - outfile = os.path.join(output_data_dir, infile.rsplit('.', 1)[0] + '.shex') - shexj = load(os.path.join(input_data_dir, infile), ShExJ) - shexc = ShExC(shexj) - self.assertIsNotNone(shexc) - shexc_text = str(shexc) - if update_output: - with open(outfile, 'w') as outf: - outf.write(shexc_text) - with open(outfile) as outf: - target_shexc = outf.read() - self.maxDiff = None - self.assertEqual(target_shexc, shexc_text) - self.assertFalse(update_output, "update_output is set to True") - - def test_conversion(self): - """ Test the ShExC emitter using the biolink model """ - self.maxDiff = None - self.do_test('biolink-model.json') - - def test_shortand(self): - self.do_test('shortand.json') - - def test_list(self): - self.do_test('list.json') - - def test_meta(self): - self.do_test('meta.json') - - -if __name__ == '__main__': - unittest.main() +@pytest.mark.parametrize("infile", [ + "biolink-model.json", + "shortand.json", + "list.json", + "meta.json", +]) +def test_conversion(infile: str) -> None: + outfile = os.path.join(output_data_dir, infile.rsplit('.', 1)[0] + '.shex') + shexj = load(os.path.join(input_data_dir, infile), ShExJ) + shexc = ShExC(shexj) + assert shexc is not None + shexc_text = str(shexc) + if update_output: + with open(outfile, 'w') as outf: + outf.write(shexc_text) + with open(outfile) as outf: + target_shexc = outf.read() + assert target_shexc == shexc_text, f"Mismatch for {infile}" + assert not update_output, "update_output is set to True" diff --git a/tests/test_issues/test_issue_1.py b/tests/test_issues/test_issue_1.py index 0f54fe8..aa1ea08 100644 --- a/tests/test_issues/test_issue_1.py +++ b/tests/test_issues/test_issue_1.py @@ -1,16 +1,11 @@ -import unittest +import pytest from pyjsg.jsglib.loader import is_valid -class ContextTestCase(unittest.TestCase): - def test_default_context(self): - from ShExJSG import Schema +def test_default_context(): + from ShExJSG import Schema - schema = Schema() - schema.start = "blabla" - self.assertTrue(is_valid(schema)) - - -if __name__ == '__main__': - unittest.main() + schema = Schema() + schema.start = "blabla" + assert is_valid(schema) diff --git a/tests/test_issues/test_issue_6.py b/tests/test_issues/test_issue_6.py index 0f36aed..bd27334 100644 --- a/tests/test_issues/test_issue_6.py +++ b/tests/test_issues/test_issue_6.py @@ -1,7 +1,5 @@ -import unittest from pyjsg.jsglib.loader import loads as jsg_loads - from ShExJSG import ShExJ @@ -22,11 +20,5 @@ }""" -class ContextTestCase(unittest.TestCase): - def test_context(self): - shema = jsg_loads(shex, ShExJ) - self.assertTrue(True) - - -if __name__ == '__main__': - unittest.main() +def test_context(): + jsg_loads(shex, ShExJ) \ No newline at end of file diff --git a/tests/test_issues/test_issue_8.py b/tests/test_issues/test_issue_8.py index 91b87dc..32a2c2f 100644 --- a/tests/test_issues/test_issue_8.py +++ b/tests/test_issues/test_issue_8.py @@ -1,5 +1,3 @@ -import unittest - from pyjsg.jsglib import loads as jsg_loads from ShExJSG import ShExC, ShExJ @@ -37,17 +35,12 @@ """ -class EmptyNodeConstraintTestCase(unittest.TestCase): - def test_empty(self): - shex_json: ShExJ.Schema = jsg_loads(shexj, ShExJ) - # Note: This test may no longer be valid, as we had invoked the ShExC compiler below to re-load the - # resulting string. For dependency reasons, we do not want to have ShExJSG dependent on the ShExC compiler so - # we've shortened this test. FWIW, it passed before we did - # shexc_str = str(ShExC(shex_json)) - # shex_c = ShExC(shexc_str) - shex_c = ShExC(shex_json) - self.assertIsNotNone(shex_c.schema) - - -if __name__ == '__main__': - unittest.main() +def test_empty_node_constraint(): + # Note: This test may no longer be valid, as we had invoked the ShExC compiler below to re-load the + # resulting string. For dependency reasons, we do not want to have ShExJSG dependent on the ShExC compiler so + # we've shortened this test. FWIW, it passed before we did + # shexc_str = str(ShExC(shex_json)) + # shex_c = ShExC(shexc_str) + shex_json: ShExJ.Schema = jsg_loads(shexj, ShExJ) + shex_c = ShExC(shex_json) + assert shex_c.schema is not None \ No newline at end of file diff --git a/tests/test_issues/test_namespaces.py b/tests/test_issues/test_namespaces.py index 8c4122b..be59c9c 100644 --- a/tests/test_issues/test_namespaces.py +++ b/tests/test_issues/test_namespaces.py @@ -1,11 +1,10 @@ -import unittest - +import pytest +from rdflib import Graph from tests import SHEXC_INSTALLED from ShExJSG.ShExC import ShExC if SHEXC_INSTALLED: from pyshexc.parser_impl.generate_shexj import parse -from rdflib import Graph shex_c = """ @@ -74,34 +73,31 @@ ) }""" -@unittest.skipIf(not SHEXC_INSTALLED, "Have to install ShExC to run these tests") -class NamespaceTestCase(unittest.TestCase): - def test_namespaces(self): - """ Test a graph based namespace manager """ - shex = parse(shex_c) - g = Graph() - g.bind('ex', 'http://example.org/sample/example1/') - g.bind('foaf', 'http://xmlns.com/foaf/0.1/') - self.assertEqual(expected, str(ShExC(shex, namespaces=g)).strip()) - - def test_namespaces2(self): - """ Test a plain namespace manager """ - shex = parse(shex_c) - g = Graph() - g.bind('ex', 'http://example.org/sample/example1/') - g.bind('foaf', 'http://xmlns.com/foaf/0.1/') - self.maxDiff = None - self.assertEqual(expected, str(ShExC(shex, namespaces=g.namespace_manager)).strip()) - - def test_with_base(self): - """ Test namespaces with base """ - shex = parse(shex_c) - g = Graph() - g.bind('ex', 'http://example.org/sample/example1/') - g.bind('foaf', 'http://xmlns.com/foaf/0.1/') - self.maxDiff = None - self.assertEqual(expected_base, - str(ShExC(shex, base='http://example.org/sample/example1/', namespaces=g)).strip()) - -if __name__ == '__main__': - unittest.main() + +@pytest.fixture +def shex_graph(): + g = Graph() + g.bind('ex', 'http://example.org/sample/example1/') + g.bind('foaf', 'http://xmlns.com/foaf/0.1/') + return g + + +@pytest.mark.skipif(not SHEXC_INSTALLED, reason="Have to install ShExC to run these tests") +def test_namespaces(shex_graph): + """Test a graph based namespace manager.""" + shex = parse(shex_c) + assert expected == str(ShExC(shex, namespaces=shex_graph)).strip() + + +@pytest.mark.skipif(not SHEXC_INSTALLED, reason="Have to install ShExC to run these tests") +def test_namespaces2(shex_graph): + """Test a plain namespace manager.""" + shex = parse(shex_c) + assert expected == str(ShExC(shex, namespaces=shex_graph.namespace_manager)).strip() + + +@pytest.mark.skipif(not SHEXC_INSTALLED, reason="Have to install ShExC to run these tests") +def test_with_base(shex_graph): + """Test namespaces with base.""" + shex = parse(shex_c) + assert expected_base == str(ShExC(shex, base='http://example.org/sample/example1/', namespaces=shex_graph)).strip() \ No newline at end of file diff --git a/tests/test_shexc.py b/tests/test_shexc.py index 69518c1..3882436 100644 --- a/tests/test_shexc.py +++ b/tests/test_shexc.py @@ -1,9 +1,9 @@ import os import sys -import unittest from io import StringIO -from typing import NamedTuple, List, TextIO, Dict +from typing import NamedTuple, List, TextIO +import pytest import requests from dict_compare import compare_dicts from jsonasobj import loads as jao_loads @@ -12,16 +12,17 @@ from ShExJSG import ShExJ, ShExC from tests import SHEXC_INSTALLED, shexTestRepository +from tests.utils.shape_decl_wrapper import rewrap_shape_decls + if SHEXC_INSTALLED: from pyshexc.parser_impl.generate_shexj import parse # If not empty, validate this single file testShexFile: str = "" -STOP_ON_ERROR = False # True means go until you hit the first error +STOP_ON_ERROR = False VERBOSE = False - NOT_SHEX_FILE = "Not a ShExJ file" NESTED_AND = "e1 AND (e2 AND e3) vs. e1 AND e2 AND e3" SEMACT_CHARS = "semAct escapes still need doing" @@ -30,13 +31,12 @@ USES_IMPORTS = "Imports is a 2.1 feature" INSANE_BNODE = "Insane BNODE Identifiers" -# Files to skip until we reintroduce a manifest reader -skip = {'coverage.json': NOT_SHEX_FILE, - 'manifest.json': NOT_SHEX_FILE, - 'representationTests.json': NOT_SHEX_FILE +skip = { + 'coverage.json': NOT_SHEX_FILE, + 'manifest.json': NOT_SHEX_FILE, + 'representationTests.json': NOT_SHEX_FILE, } - if testShexFile and not testShexFile.endswith(".json"): testShexFile += ".json" @@ -46,45 +46,27 @@ del skip[k] -class TestFile(NamedTuple): +class ExampleTestFile(NamedTuple): fullpath: str filename: str def compare_json(j1: str, j2: str, log: TextIO) -> bool: - """ - Compare two JSON representation - :param j1: first string - :param j2: second string - :param log: log file to record differences - :return: Result of comparison - """ d1 = jao_loads(j1) d2 = jao_loads(j2) return compare_dicts(d1._as_dict, d2._as_dict, file=log) def validate_shexc_json(json_str: str, input_fname: str) -> bool: - """ - Validate json_str against ShEx Schema - :param json_str: String to validate - :param input_fname: Name of source file for error reporting - :return: True if pass - """ logger = StringIO() - - # Load the JSON image of the good object and make sure it is valud shex_json: ShExJ.Schema = jsg_loads(json_str, ShExJ) if not is_valid(shex_json, logger): - print("File: {} - ".format(input_fname)) + print(f"File: {input_fname} - ") print(logger.getvalue()) return False - - # Convert the JSON image into ShExC shexc_str = str(ShExC(shex_json)) - - # Convert the ShExC back into ShExJ output_shex_obj = parse(shexc_str) + output_shex_obj = rewrap_shape_decls(output_shex_obj) if output_shex_obj is None: print(f"{input_fname}") for number, line in enumerate(shexc_str.split('\n')): @@ -98,106 +80,62 @@ def validate_shexc_json(json_str: str, input_fname: str) -> bool: return rval -class Stats: - def __init__(self): - self.total = self.passed = self.skipped = self.failed = 0 - self.skipreasons: Dict[str, int] = {} - - def __str__(self): - return f"*** Total tests: {self.total}\n" + \ - f"\tPassed: {self.passed}\n" + \ - f"\tSkipped: {self.skipped}\n" + \ - f"\tFailed: {self.failed}\n\n" + \ - "*** Skip Reasons ***\n" + '\n'.join(f"\t{sk} : {self.skipreasons[sk]}" - for sk in self.skipreasons.keys()) - - -def validate_file(file: TestFile, stats: Stats) -> bool: - """ - Download the file in download_url and validate it using the supplied module - :param file: path and name of file to download - :param stats: Statistics gathering module - :return: - """ - stats.total += 1 - if file.filename not in skip: - if VERBOSE: - print(f"Testing {file.fullpath}") - if ':' in file.fullpath: - resp = requests.get(file.fullpath) - if resp.ok: - file_text = resp.text - else: - print("Error {}: {}".format(resp.status_code, resp.reason)) - stats.failed += 1 - return False - else: - with open(file.fullpath) as f: - file_text = f.read() - if validate_shexc_json(file_text, file.fullpath): - stats.passed += 1 - return True - else: - stats.failed += 1 - return False - else: - print("Skipping {}".format(file.fullpath)) - stats.skipped += 1 - key = skip[file.filename] - if key not in stats.skipreasons: - stats.skipreasons[key] = 0 - stats.skipreasons[key] = stats.skipreasons[key] + 1 - return True - - -def validate_shex_schemas() -> bool: - """ - Validate either the file named in shexTestJson or the files in shexTestRepository against the AST - :return: - """ - stats = Stats() - if not testShexFile: - test_list: List[TestFile] = enumerate_http_files(shexTestRepository) if ':' in shexTestRepository else \ - enumerate_directory(shexTestRepository) - if test_list is None: - rval = True - elif STOP_ON_ERROR: - rval = all(validate_file(e, stats) for e in test_list if e.filename.endswith('.json')) - else: - rval = all([validate_file(e, stats) for e in test_list if e.filename.endswith('.json')]) - else: - rval = validate_file(TestFile(os.path.join(shexTestRepository, testShexFile), testShexFile), stats) - print(str(stats)) - return rval - - -def enumerate_http_files(url) -> List[TestFile]: +def enumerate_http_files(url) -> List[ExampleTestFile]: resp = requests.get(url) if resp.ok: for f in resp.json(): - yield TestFile(f['download_url'], f['name']) + yield ExampleTestFile(f['download_url'], f['name']) else: - print("Error {}: {}".format(resp.status_code, resp.reason), file=sys.stderr) + print(f"Error {resp.status_code}: {resp.reason}", file=sys.stderr) -def enumerate_directory(dir_) -> List[TestFile]: +def enumerate_directory(dir_) -> List[ExampleTestFile]: for fname in os.listdir(dir_): fpath = os.path.join(dir_, fname) if os.path.isfile(fpath): - yield TestFile(fpath, fname) - + yield ExampleTestFile(fpath, fname) + + +def get_test_files() -> List[ExampleTestFile]: + if testShexFile: + return [ExampleTestFile(os.path.join(shexTestRepository, testShexFile), testShexFile)] + if ':' in shexTestRepository: + return list(enumerate_http_files(shexTestRepository)) + return list(enumerate_directory(shexTestRepository)) + + +def validate_file(file: ExampleTestFile) -> tuple[bool, str | None]: + """Returns (passed, skip_reason) where skip_reason is None if not skipped.""" + if file.filename in skip: + return True, skip[file.filename] + if VERBOSE: + print(f"Testing {file.fullpath}") + if ':' in file.fullpath: + resp = requests.get(file.fullpath) + if not resp.ok: + print(f"Error {resp.status_code}: {resp.reason}") + return False, None + file_text = resp.text + else: + with open(file.fullpath) as f: + file_text = f.read() + return validate_shexc_json(file_text, file.fullpath), None -@unittest.skipIf(not SHEXC_INSTALLED, "ShExC must be installed to run this test") -class ShExCValidationTestCase(unittest.TestCase): - """ 1) Convert the contents of the shexTest/schema's directory into ShExJSG - 2) Convert the ShExJSG into ShExC - 3) Parse the ShExC back into ShExJSG - 4) Compare the input and output JSG's - """ - def test_shex_schema(self): - self.assertTrue(validate_shex_schemas()) +def pytest_generate_tests(metafunc): + if "shex_file" in metafunc.fixturenames: + files = [f for f in get_test_files() if f.filename.endswith('.json')] + metafunc.parametrize("shex_file", files, ids=[f.filename for f in files]) -if __name__ == '__main__': - unittest.main() +@pytest.mark.skipif(not SHEXC_INSTALLED, reason="ShExC must be installed to run this test") +def test_shex_schema(shex_file: ExampleTestFile): + """1) Convert the contents of the shexTest/schema's directory into ShExJSG + 2) Convert the ShExJSG into ShExC + 3) Parse the ShExC back into ShExJSG + 4) Compare the input and output JSG's + """ + passed, skip_reason = validate_file(shex_file) + if skip_reason: + pytest.skip(skip_reason) + assert passed, f"Validation failed for {shex_file.fullpath}" diff --git a/tests/test_shexj.py b/tests/test_shexj.py index 944a732..ed78560 100644 --- a/tests/test_shexj.py +++ b/tests/test_shexj.py @@ -1,9 +1,9 @@ import os import sys -import unittest from io import StringIO from typing import Optional, TextIO, List, NamedTuple +import pytest import requests from dict_compare import compare_dicts from jsonasobj import loads as jao_loads @@ -17,137 +17,102 @@ # shexTestJson = "https://raw.githubusercontent.com/shexSpec/shexTest/2.0/schemas/" \ # "1refbnode_with_spanning_PN_CHARS_BASE1.json" - -STOP_ON_ERROR = False # True means go until you hit one error +STOP_ON_ERROR = False VERBOSE = False -# Files to skip until we reintroduce a manifest reader skip = ['coverage.json', 'manifest.json', 'representationTests.json'] -class TestFile(NamedTuple): +class ExampleTestFile(NamedTuple): fullpath: str filename: str def compare_json(j1: str, j2: str, log: TextIO) -> bool: - """ - Compare two JSON representation - :param j1: first string - :param j2: second string - :param log: log file to record differences - :return: Result of comparison - """ d1 = jao_loads(j1) d2 = jao_loads(j2) return compare_dicts(d1._as_dict, d2._as_dict, file=log) def validate_shexj_json(json_str: str, input_fname: str) -> bool: - """ - Validate json_str against ShEx Schema - :param json_str: String to validate - :param input_fname: Name of source file for error reporting - :return: True if pass - """ logger = StringIO() shex_obj = jsg_loads(json_str, ShExJ) if not is_valid(shex_obj, logger): - print("File: {} - ".format(input_fname)) + print(f"File: {input_fname} - ") print(logger.getvalue()) return False elif not compare_json(json_str, shex_obj._as_json, logger): - print("File: {} - ".format(input_fname)) + print(f"File: {input_fname} - ") print(logger.getvalue()) print(shex_obj._as_json_dumps()) return False return True -def validate_file(file: TestFile) -> bool: - """ - Download the file in download_url and validate it using the supplied module - :param file: path and name fo file to download - :return: - """ - if file.filename not in skip: - if VERBOSE: - print(f"Testing {file.fullpath}") - if ':' in file.fullpath: - resp = requests.get(file.fullpath) - if resp.ok: - file_text = resp.text - else: - print("Error {}: {}".format(resp.status_code, resp.reason)) - return False - else: - with open(file.fullpath, 'rb') as f: - file_text = f.read().decode() - return validate_shexj_json(file_text, file.fullpath) +def validate_file(file: ExampleTestFile) -> tuple[bool, bool]: + """Returns (passed, skipped).""" + if file.filename in skip: + return True, True + if VERBOSE: + print(f"Testing {file.fullpath}") + if ':' in file.fullpath: + resp = requests.get(file.fullpath) + if not resp.ok: + print(f"Error {resp.status_code}: {resp.reason}") + return False, False + file_text = resp.text else: - print("Skipping {}".format(file.fullpath)) - return True + with open(file.fullpath, 'rb') as f: + file_text = f.read().decode() + return validate_shexj_json(file_text, file.fullpath), False def download_github_file(github_url: str) -> Optional[str]: - """ - Download the file in github_url - :param github_url: github url to download - :return: file contents if success, None otherwise - """ - print("Downloading {}".format(github_url)) + print(f"Downloading {github_url}") resp = requests.get(github_url) if resp.ok: resp = requests.get(resp.json()['download_url']) if resp.ok: return resp.text - print("Error {}: {}".format(resp.status_code, resp.reason)) + print(f"Error {resp.status_code}: {resp.reason}") return None -def validate_shex_schemas() -> bool: - """ - Validate either the file named in shexTestJson or the files in shexTestRepository against the AST - :return: - """ - if not shexTestJson: - test_list: List[TestFile] = enumerate_http_files(shexTestRepository) if ':' in shexTestRepository else \ - enumerate_directory(shexTestRepository) - if test_list is None: - rval = True - elif STOP_ON_ERROR: - rval = all(validate_file(e) for e in test_list if e.filename.endswith('.json')) - else: - rval = all([validate_file(e) for e in test_list if e.filename.endswith('.json')]) - else: - return validate_file(TestFile(shexTestJson, shexTestJson.rsplit('/')[1])) - return rval - - -def enumerate_http_files(url) -> List[TestFile]: +def enumerate_http_files(url) -> List[ExampleTestFile]: resp = requests.get(url) if resp.ok: for f in resp.json(): - yield TestFile(f['download_url'], f['name']) + yield ExampleTestFile(f['download_url'], f['name']) else: - print("Error {}: {}".format(resp.status_code, resp.reason), file=sys.stderr) + print(f"Error {resp.status_code}: {resp.reason}", file=sys.stderr) -def enumerate_directory(dir_) -> List[TestFile]: +def enumerate_directory(dir_) -> List[ExampleTestFile]: for fname in os.listdir(dir_): fpath = os.path.join(dir_, fname) if os.path.isfile(fpath): - yield TestFile(fpath, fname) + yield ExampleTestFile(fpath, fname) -class ShExJValidationTestCase(unittest.TestCase): - """ Download the contents of the shexTestRepository and make sure that they can all be correctly loaded as - ShExJSG images. - """ - @unittest.skipIf(False, "Temporarily disabled - remove me before submit") - def test_shex_schema(self): - self.assertTrue(validate_shex_schemas()) +def get_test_files() -> List[ExampleTestFile]: + if shexTestJson: + return [ExampleTestFile(shexTestJson, shexTestJson.rsplit('/')[1])] + if ':' in shexTestRepository: + return list(enumerate_http_files(shexTestRepository)) + return list(enumerate_directory(shexTestRepository)) + + +def pytest_generate_tests(metafunc): + if "shex_file" in metafunc.fixturenames: + files = [f for f in get_test_files() if f.filename.endswith('.json')] + metafunc.parametrize("shex_file", files, ids=[f.filename for f in files]) -if __name__ == '__main__': - unittest.main() +def test_shex_schema(shex_file: ExampleTestFile): + """Download the contents of the shexTestRepository and make sure that they can all be correctly loaded as + ShExJSG images. + """ + passed, skipped = validate_file(shex_file) + if skipped: + pytest.skip(f"Skipping {shex_file.filename}") + assert passed, f"Validation failed for {shex_file.fullpath}" diff --git a/tests/test_valueExpr.py b/tests/test_valueExpr.py index d238b76..3af8381 100644 --- a/tests/test_valueExpr.py +++ b/tests/test_valueExpr.py @@ -20,27 +20,24 @@ # WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. # IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, # INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, -# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, +# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, # DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF # LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED # OF THE POSSIBILITY OF SUCH DAMAGE. -import unittest +import pytest from ShExJSG import ShExJ -class ValueExprTestCase(unittest.TestCase): - def test(self): +def test_triple_constraint_predicate_rejects_non_iri(): + tc = ShExJ.TripleConstraint() + with pytest.raises(ValueError): + tc.predicate = 17 - tc = ShExJ.TripleConstraint() - with self.assertRaises(ValueError): - tc.predicate = 17 - with self.assertRaises(ValueError): - tc.valueExpr = "This should fail" - - -if __name__ == '__main__': - unittest.main() +def test_triple_constraint_value_expr_rejects_string(): + tc = ShExJ.TripleConstraint() + with pytest.raises(ValueError): + tc.valueExpr = "This should fail" diff --git a/tests/utils/__init__.py b/tests/utils/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/utils/shape_decl_wrapper.py b/tests/utils/shape_decl_wrapper.py new file mode 100644 index 0000000..40fc222 --- /dev/null +++ b/tests/utils/shape_decl_wrapper.py @@ -0,0 +1,35 @@ +def strip_shape_expr_id(shape_expr): + if not hasattr(shape_expr, "id"): + return shape_expr + + # only remove id, DO NOT reconstruct full object + shape_expr.id = None + return shape_expr + +def rewrap_shape_decls(schema): + from ShExJSG.ShExJ import ShapeDecl + new_shapes = [] + + for shape in schema.shapes: + if isinstance(shape, ShapeDecl): + new_shapes.append(shape) + continue + + context = getattr(schema, "_context", None) or getattr(shape, "_context", None) + + shape_decl_id = shape.id + shape_expr = shape + shape_expr = strip_shape_expr_id(shape_expr) + + decl = ShapeDecl( + id=shape_decl_id, + abstract=getattr(shape, "abstract", None), + restricts=getattr(shape, "restricts", None), + shapeExpr=shape_expr, + _context=context + ) + + new_shapes.append(decl) + + schema.shapes = new_shapes + return schema \ No newline at end of file diff --git a/tox.ini b/tox.ini deleted file mode 100644 index 861b9f0..0000000 --- a/tox.ini +++ /dev/null @@ -1,13 +0,0 @@ -[tox] -envlist = py37, py38, py39, py310 - -[testenv] -deps= - unittest2 - yadict-compare - requests - jsonasobj>=1.2.1 - pyshexc>=0.8 -whitelist_externals = python -commands=python -m unittest - diff 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