diff --git a/mcp/tool.go b/mcp/tool.go
index 04cf551a..5789be0c 100644
--- a/mcp/tool.go
+++ b/mcp/tool.go
@@ -62,6 +62,44 @@ type serverTool struct {
 	handler ToolHandler
 }
 
+// maxJSONDepth is the maximum nesting depth accepted for tool arguments and
+// output. Deeply nested JSON is rejected up front to avoid pathological
+// validation costs on adversarial input.
+const maxJSONDepth = 1000
+
+// checkJSONDepth scans data and reports an error if its nesting depth exceeds
+// maxJSONDepth. It is linear in the length of data and ignores the contents of
+// string literals.
+func checkJSONDepth(data json.RawMessage) error {
+	depth := 0
+	inString := false
+	escaped := false
+	for _, b := range data {
+		if inString {
+			if escaped {
+				escaped = false
+			} else if b == '\\' {
+				escaped = true
+			} else if b == '"' {
+				inString = false
+			}
+			continue
+		}
+		switch b {
+		case '"':
+			inString = true
+		case '{', '[':
+			depth++
+			if depth > maxJSONDepth {
+				return fmt.Errorf("JSON nesting exceeds maximum allowed depth of %d", maxJSONDepth)
+			}
+		case '}', ']':
+			depth--
+		}
+	}
+	return nil
+}
+
 // applySchema validates whether data is valid JSON according to the provided
 // schema, after applying schema defaults.
 //
@@ -76,6 +114,13 @@ func applySchema(data json.RawMessage, resolved *jsonschema.Resolved, forOutput
 	// TODO: use reflection to create the struct type to unmarshal into.
 	// Separate validation from assignment.
 
+	// Reject deeply nested input before unmarshaling or validating. Deep
+	// nesting can make schema validation quadratic in the input depth, and the
+	// JSON decoder used here does not impose a nesting limit of its own.
+	if err := checkJSONDepth(data); err != nil {
+		return nil, err
+	}
+
 	// Use default JSON marshalling for validation.
 	//
 	// This avoids inconsistent representation due to custom marshallers, such as
diff --git a/mcp/tool_test.go b/mcp/tool_test.go
index 7a82c96d..81a68e26 100644
--- a/mcp/tool_test.go
+++ b/mcp/tool_test.go
@@ -59,6 +59,49 @@ func TestApplySchema(t *testing.T) {
 	}
 }
 
+func TestApplySchemaRejectsDeeplyNestedInput(t *testing.T) {
+	schema := &jsonschema.Schema{Type: "object"}
+	resolved, err := schema.Resolve(&jsonschema.ResolveOptions{ValidateDefaults: true})
+	if err != nil {
+		t.Fatal(err)
+	}
+
+	nested := func(depth int) string {
+		var b strings.Builder
+		b.WriteString("{\"a\":")
+		for i := 0; i < depth; i++ {
+			b.WriteString("[")
+		}
+		b.WriteString("1")
+		for i := 0; i < depth; i++ {
+			b.WriteString("]")
+		}
+		b.WriteString("}")
+		return b.String()
+	}
+
+	// Deeply nested input must be rejected quickly, regardless of the schema.
+	// nested(depth) builds one object wrapper plus `depth` nested arrays, so the
+	// total nesting is depth+1.
+	for _, depth := range []int{maxJSONDepth, 2000, 20000} {
+		raw := json.RawMessage(nested(depth))
+		if _, err := applySchema(raw, resolved, false); err == nil {
+			t.Errorf("applySchema with depth %d: got nil error, want depth error", depth)
+		}
+	}
+
+	// Nesting at or below the limit must still validate.
+	if _, err := applySchema(json.RawMessage(nested(maxJSONDepth-1)), resolved, false); err != nil {
+		t.Errorf("applySchema with depth %d: unexpected error: %v", maxJSONDepth, err)
+	}
+
+	// Braces inside string literals must not count toward nesting depth.
+	data := `{"a":"[[[[[[[[[[[[[[[[[[[[","b":[1,2,3]}`
+	if _, err := applySchema(json.RawMessage(data), resolved, false); err != nil {
+		t.Errorf("applySchema with deep string literal: unexpected error: %v", err)
+	}
+}
+
 func TestApplySchemaOutput(t *testing.T) {
 	// SEP-2106: when forOutput is true, the schema may have a non-object root.
 	for _, tc := range []struct {