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Release candidate 0.1.3 (#80)
* Update NEWS * Use new version of butcher * Rev dep checks * Info on rev dep checks * Update README * v0.1.3 is now on CRAN * Try with `any::yaml`
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‎.github/workflows/R-CMD-check.yaml‎

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- uses: r-lib/actions/setup-r-dependencies@v2
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with:
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extra-packages: any::rcmdcheck
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extra-packages: any::rcmdcheck, any::yaml
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needs: check
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- name: Install reticulate

‎DESCRIPTION‎

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Package: bundle
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Title: Serialize Model Objects with a Consistent Interface
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Version: 0.1.2.9000
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Version: 0.1.3
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Authors@R: c(
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person("Julia", "Silge", , "julia.silge@posit.co", role = c("aut", "cre"),
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comment = c(ORCID = "0000-0002-3671-836X")),
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withr
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Suggests:
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bonsai,
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butcher (>= 0.3.6.9000),
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butcher (>= 0.4.0),
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callr,
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caret,
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covr,
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xgboost (>= 1.6.0.1)
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VignetteBuilder:
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knitr
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Remotes:
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tidymodels/butcher
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Config/Needs/website: tidyverse/tidytemplate
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Config/testthat/edition: 3
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Config/usethis/last-upkeep: 2025-12-08

‎NEWS.md‎

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# bundle (development version)
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# bundle 0.1.3
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* Make to work with new versions of xgboost models (#75).
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* Updated to support new versions of xgboost models (#75).
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# bundle 0.1.2
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‎README.Rmd‎

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<!-- badges: start -->
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[![R-CMD-check](https://github.com/rstudio/bundle/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/rstudio/bundle/actions/workflows/R-CMD-check.yaml)
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[![CRAN status](https://www.r-pkg.org/badges/version/bundle)](https://CRAN.R-project.org/package=bundle)
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[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
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[![Codecov test coverage](https://codecov.io/gh/rstudio/bundle/branch/main/graph/badge.svg)](https://app.codecov.io/gh/rstudio/bundle?branch=main)
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[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
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[![Codecov test coverage](https://codecov.io/gh/rstudio/bundle/graph/badge.svg)](https://app.codecov.io/gh/rstudio/bundle)
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<!-- badges: end -->
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```{r}
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# fit an boosted tree with xgboost via parsnip
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mod <-
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boost_tree(trees = 5, mtry = 3) |>
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set_mode("regression") |>
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set_engine("xgboost") |>
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fit(mpg ~ ., data = mtcars[1:25,])
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boost_tree(trees = 5, mtry = 3) |>
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set_mode("regression") |>
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set_engine("xgboost") |>
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fit(mpg ~ ., data = mtcars[1:25, ])
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mod
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```
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unbundled_mod <-
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unbundle(bundled_mod)
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predict(unbundled_mod, new_data = mtcars[26:32,])
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predict(unbundled_mod, new_data = mtcars[26:32, ])
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},
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args = list(
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bundled_mod = bundled_mod

‎README.md‎

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[![CRAN
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status](https://www.r-pkg.org/badges/version/bundle)](https://CRAN.R-project.org/package=bundle)
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[![Lifecycle:
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experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
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stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
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[![Codecov test
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coverage](https://codecov.io/gh/rstudio/bundle/branch/main/graph/badge.svg)](https://app.codecov.io/gh/rstudio/bundle?branch=main)
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[![Codecov test
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coverage](https://codecov.io/gh/rstudio/bundle/graph/badge.svg)](https://app.codecov.io/gh/rstudio/bundle)
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<!-- badges: end -->
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Typically, models in R exist in memory and can be saved as `.rds` files.
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``` r
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# fit an boosted tree with xgboost via parsnip
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mod <-
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boost_tree(trees = 5, mtry = 3) |>
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set_mode("regression") |>
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set_engine("xgboost") |>
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fit(mpg ~ ., data = mtcars[1:25,])
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boost_tree(trees = 5, mtry = 3) |>
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set_mode("regression") |>
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set_engine("xgboost") |>
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fit(mpg ~ ., data = mtcars[1:25, ])
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mod
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#> parsnip model object
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#> evaluation_log:
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#> iter training_rmse
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#> <int> <num>
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#> 1 4.618358
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#> 2 3.627921
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#> 3 2.891176
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#> 4 2.300624
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#> 5 1.852596
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#> 1 4.655552
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#> 2 3.648086
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#> 3 2.877980
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#> 4 2.302021
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#> 5 1.850090
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```
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Note that simply saving and loading the model results in changes to the
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compare(mod, mod2, ignore_formula_env = TRUE)
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#> `old$fit$ptr` is <pointer: 0x10b535700>
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#> `new$fit$ptr` is <pointer: 0x10b56be40>
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#> `old$fit$ptr` is <pointer: 0x11a0cf990>
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#> `new$fit$ptr` is <pointer: 0x10bed38a0>
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```
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Saving and reloading `mod2` didn’t preserve XGBoost’s reference to its
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predict(unbundled_mod, new_data = mtcars[26:32,])
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predict(unbundled_mod, new_data = mtcars[26:32, ])
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},
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args = list(
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bundled_mod = bundled_mod
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#> # A tibble: 7 × 1
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#> .pred
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#> <dbl>
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#> 1 28.7
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#> 2 25.0
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#> 3 23.7
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#> 4 18.0
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#> 5 20.3
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#> 6 14.9
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#> 7 22.2
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#> 1 28.6
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#> 2 25.8
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#> 3 25.8
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#> 4 16.7
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#> 5 20.2
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#> 6 15.3
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#> 7 21.2
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```
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For a more in-depth demonstration of the package, see the [main

‎cran-comments.md‎

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## revdepcheck results
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We checked 1 reverse dependency, comparing R CMD check results across CRAN and dev versions of this package.
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We checked 3 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
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* We saw 0 new problems
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* We failed to check 0 packages
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* We failed to check 1 packages
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Issues with CRAN packages are summarised below.
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### Failed to check
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* ldmppr (NA)

‎revdep/README.md‎

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# Platform
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|field |value |
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|:--------|:------------------------------|
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|version |R version 4.4.0 (2024-04-24) |
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|os |macOS 15.0.1 |
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|system |aarch64, darwin20 |
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|ui |X11 |
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|language |(EN) |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |America/Denver |
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|date |2024-11-11 |
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|pandoc |3.5 @ /opt/homebrew/bin/pandoc |
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|field |value |
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|:--------|:------------------------------------------|
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|version |R version 4.5.2 (2025-10-31) |
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|os |macOS Tahoe 26.1 |
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|system |aarch64, darwin20 |
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|ui |X11 |
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|language |(EN) |
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |America/Denver |
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|date |2025-12-09 |
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|pandoc |3.8.3 @ /opt/homebrew/bin/ (via rmarkdown) |
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|quarto |1.9.3 @ /usr/local/bin/quarto |
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# Dependencies
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|package |old |new |Δ |
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|:-------|:-----|:----------|:--|
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|bundle |0.1.1 |0.1.1.9000 |* |
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|bundle |0.1.2 |0.1.2.9000 |* |
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# Revdeps
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## Failed to check (1)
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|package |version |error |warning |note |
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|:-------|:-------|:-----|:-------|:----|
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|ldmppr |1.0.4 |1 | | |
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‎revdep/cran.md‎

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## revdepcheck results
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We checked 1 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
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We checked 3 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
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* We saw 0 new problems
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* We failed to check 0 packages
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* We failed to check 1 packages
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Issues with CRAN packages are summarised below.
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### Failed to check
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* ldmppr (NA)

‎revdep/failures.md‎

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*Wow, no problems at all. :)*
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# ldmppr
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<details>
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* Version: 1.0.4
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* GitHub: https://github.com/lanedrew/ldmppr
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* Source code: https://github.com/cran/ldmppr
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* Date/Publication: 2025-02-24 21:00:02 UTC
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* Number of recursive dependencies: 128
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Run `revdepcheck::revdep_details(, "ldmppr")` for more info
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</details>
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## In both
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* checking whether package ‘ldmppr’ can be installed ... ERROR
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```
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Installation failed.
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See ‘/Users/juliasilge/Work/posit/bundle/revdep/checks.noindex/ldmppr/new/ldmppr.Rcheck/00install.out’ for details.
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```
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## Installation
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### Devel
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```
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* installing *source* package ‘ldmppr’ ...
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** this is package ‘ldmppr’ version ‘1.0.4’
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** package ‘ldmppr’ successfully unpacked and MD5 sums checked
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** using staged installation
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** libs
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using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.4.4.1)’
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using C++17
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using SDK: ‘MacOSX26.1.sdk’
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clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/juliasilge/Work/posit/bundle/revdep/library.noindex/ldmppr/Rcpp/include' -I'/Users/juliasilge/Work/posit/bundle/revdep/library.noindex/ldmppr/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
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clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/juliasilge/Work/posit/bundle/revdep/library.noindex/ldmppr/Rcpp/include' -I'/Users/juliasilge/Work/posit/bundle/revdep/library.noindex/ldmppr/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c self_correcting_model.cpp -o self_correcting_model.o
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clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o ldmppr.so RcppExports.o self_correcting_model.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
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ld: warning: search path '/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0' not found
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ld: warning: search path '/opt/gfortran/lib' not found
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ld: library 'emutls_w' not found
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clang++: error: linker command failed with exit code 1 (use -v to see invocation)
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make: *** [ldmppr.so] Error 1
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ERROR: compilation failed for package ‘ldmppr’
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* removing ‘/Users/juliasilge/Work/posit/bundle/revdep/checks.noindex/ldmppr/new/ldmppr.Rcheck/ldmppr’
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```
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### CRAN
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```
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* installing *source* package ‘ldmppr’ ...
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** this is package ‘ldmppr’ version ‘1.0.4’
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** package ‘ldmppr’ successfully unpacked and MD5 sums checked
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** using staged installation
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** libs
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using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.4.4.1)’
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using C++17
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using SDK: ‘MacOSX26.1.sdk’
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clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/juliasilge/Work/posit/bundle/revdep/library.noindex/ldmppr/Rcpp/include' -I'/Users/juliasilge/Work/posit/bundle/revdep/library.noindex/ldmppr/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
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clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/juliasilge/Work/posit/bundle/revdep/library.noindex/ldmppr/Rcpp/include' -I'/Users/juliasilge/Work/posit/bundle/revdep/library.noindex/ldmppr/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c self_correcting_model.cpp -o self_correcting_model.o
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clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o ldmppr.so RcppExports.o self_correcting_model.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
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ld: warning: search path '/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0' not found
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ld: warning: search path '/opt/gfortran/lib' not found
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ld: library 'emutls_w' not found
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clang++: error: linker command failed with exit code 1 (use -v to see invocation)
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make: *** [ldmppr.so] Error 1
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ERROR: compilation failed for package ‘ldmppr’
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* removing ‘/Users/juliasilge/Work/posit/bundle/revdep/checks.noindex/ldmppr/old/ldmppr.Rcheck/ldmppr’
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```

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