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33Examples from real datasets you'd actually analyse.
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89:::{grid-item-card} Visium mouse brain
9- :link : visium_mouse_brain
10+ :link : /notebooks/examples/ visium_mouse_brain
1011:link-type: doc
11- :img-top: .. /_ static/img/visium_mouse_brain.png
12+ :img-top: /notebooks /_ static/img/visium_mouse_brain.png
1213
1314Render H&E tissue, overlay spots, color by gene expression and by cluster,
1415and finish with a publication-style figure.
1516:::
1617
1718:::{grid-item-card} Interactive region annotation
18- :link : interactive_annotate
19+ :link : /notebooks/examples/ interactive_annotate
1920:link-type: doc
20- :img-top: .. /_ static/img/interactive_annotate.png
21+ :img-top: /notebooks /_ static/img/interactive_annotate.png
2122
2223Draw regions of interest directly on a ` spatialdata-plot ` canvas with
2324` sdata.pl.annotate(...) ` and persist them as a ` ShapesModel ` element.
2425:::
2526
2627::::
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2729
2830``` {toctree}
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33Entry-point material for learning the API on synthetic data.
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89:::{grid-item-card} Getting started
9- :link : getting_started
10+ :link : /notebooks/tutorials/ getting_started
1011:link-type: doc
11- :img-top: .. /_ static/img/getting_started.png
12+ :img-top: /notebooks /_ static/img/getting_started.png
1213
1314The fluent ` .pl ` API, layering, and styling on the in-memory ` blobs `
1415dataset. Ideal first read.
1516:::
1617
1718:::{grid-item-card} Colour and palettes
18- :link : color_and_palette
19+ :link : /notebooks/tutorials/ color_and_palette
1920:link-type: doc
20- :img-top: .. /_ static/img/color_and_palette.png
21+ :img-top: /notebooks /_ static/img/color_and_palette.png
2122
2223How ` color= ` resolves, the v0.3.0 ` groups ` behaviour, and building
2324perceptually well-spaced or colourblind-safe palettes with
2425` make_palette ` and ` make_palette_from_data ` .
2526:::
2627
2728:::{grid-item-card} Speeding up rendering
28- :link : performance
29+ :link : /notebooks/tutorials/ performance
2930:link-type: doc
30- :img-top: .. /_ static/img/performance.png
31+ :img-top: /notebooks /_ static/img/performance.png
3132
3233Keep rendering fast on large data: automatic rasterization and scale
3334selection for images, and the ` datashader ` backend for large collections
3435of shapes and points.
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3738::::
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3840
3941``` {toctree}
4042:hidden:
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