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Fix 1.1 release audit findings and complete documentation follow-ups - #286

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jeremymanning merged 228 commits into

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fix/1.1-release-review

Oct 9, 2026

Commits on Sep 6, 2026
Commits on Sep 7, 2026
Commits on Sep 8, 2026
Commits on Sep 9, 2026
Commits on Sep 10, 2026
Commits on Sep 11, 2026
- fix: make notebook review I/O portable to Windows
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- ci: provision the verified Ruff version for lint checks
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- fix: stream plots under a plotly render backend; scan axis labels for font gaps
  
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- tour: pin matplotlib-only cases and render the describe curve
  
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- notes: 2026-09-11 final review findings and fix-wave plan
  
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- fix(io): yahoo intraday bars keep their timestamps instead of midnight
  
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- fix(normalize): a fitted Normalizer reads 1-D data as one column
  
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- fix(forecast): split marker+line fmt no longer shifts forecast/truth styles onto the wrong dataset
  
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- fix(truth): ndims=1 truth= must be one column of values per trace
  
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- fix(plot): per-dataset {category: color} dict palettes colour marker-only hue plots
  
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- fix(autoinstall): no teardown traceback; a re-entered handle keeps call order
  
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- fix(1-D): a one-column trace's x is the row index in rows, on both backends
  
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- fix(animate): live forecasts on 2-column data follow the axes' dimensionality
  
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- fix(forecast): a forecast_fmt marker is drawn at the forecast's steps only
  
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- docs(changelog): correct 1.1.0 claims found by the release-document review
  
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- fix(io): a sniffed zip keeps the .npz trust error instead of a parquet one
  
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- fix(io): offline misses of guessed sources and unparseable cached copies
  
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- fix(align): Aligner classes read arrays; alignment warnings name the caller
  
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- fix(align): dispersion score raises when every dataset is constant
  
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- notes: record hover-name report, docs findings, worktree-base lesson
  
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- fix(forecast): marker-only categorical regrouping always refuses to anchor forecasts
  
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- build: scikit-image floor 0.25.0, the first release with cp313 wheels
  
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- release: fix checklist order and claims; gate a stale CHANGELOG date
  
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- fix(legend): legend_colors= list may name one colour per data entry beside overlays
  
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- fix(load): the TypeError lists polars frames, which load() accepts
  
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- fix(pipeline): rows a manip stage empties stop the pipeline there
  
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- tour: apply figure-QA adjudication to cases and Inspect text
  
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- fix(plotly): markers only at true observations; hue markers honour alpha; Scatter3d keeps hue under mixed alpha
  
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- fix(plot): composing into ax= continues the palette without repeating a colour; bundle and colorbar report the drawn colours
  
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- fix(plot): panels= splits a plain legend_colors list per panel
  
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- fix(plot): two-column data draws into a 2-D ax= at the default ndims
  
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- docs(release-notes): refresh the 1.1.0 draft from the reviewed CHANGELOG
  
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- fix(plot): per-dataset and nested labels= survive hue=/cluster= regrouping; nested label arrays/Series accepted on one axes
  
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- fix(colors): a 0-255 colour list raises instead of becoming a data palette
  
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- Merge W6: release checklist, notes, CHANGELOG corrections
  
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- fix(plot): a reused pipeline's fitted cluster step colours the figure
  
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- fix(fonts): font='Noto Sans' resolves the bundled face in a fresh process
  
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- fix(plotly, dates): date axes are time-zone invariant; open-ended date xlim works
  
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- fix(matplotlib): an explicit marker= wins over the fmt marker, and markers on a smoothed line sit only at the samples
  
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- fix(panels): forecast_trail= no longer refuses itself in the panel probe
  
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- fix(predict): forecast regular calendar data on its own calendar
  
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- fix(plotly): cell colorbar placement, kept cell titles, clear ax= dimensionality errors, caller traces untouched, ax= infers plotly
  
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- fix(matplotlib): continuous-hue markers carry alpha=
  
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- fix(plotly): refuse 1-D animations like matplotlib; serial FrameContext.window_bounds report the comet head
  
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- fix(transform): bare-array transform= is one dataset; a frame's index no longer NaNs the forecast
  
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- fix(predict): reuse a fitted forecaster across index kinds again (1.0 regression)
  
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- fix(plot): the non-finite hue warning counts observations and names the caller
  
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- Merge W2: io/tools/_shared/colors/fonts review fixes
  
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- fix(warnings): align/impute/manip/core warnings name the caller's line
  
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- fix(predict): ARIMA's minimum history counts seasonal_order
  
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- fix(matplotlib): observation-label connectors and box edges are drawn dark, as on plotly
  
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- test(predict): time-policy warnings are issued once, and only when they apply
  
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- fix(truth): the 'truth' legend key is neutral gray when truths span several colours
  
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- fix(matplotlib): titles and axis labels on caller axes and panels= cells use hypertools' font stack
  
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- fix(ndims=1): a shuffled time index is drawn in time order, joining its forecast
  
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- docs: fix tutorial/example content findings from the 2026-09-11 review
  
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- fix(plotly): honour frame_kwargs, keep zoom animation-only, anchor a positioned legend, document 3-D marker mapping
  
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- fix(ndims=1): concise date ticks on matplotlib so labels never collide
  
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- fix(plot): a nested-list input's legend names its outer groups
  
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- docs(projectile_kalman): say what the forecast figures show
  
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- fix(matplotlib): marker= on a line fmt stays one artist, marked at the samples via markevery
  
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- fix(surface): colour hull vertices from their nearest points; headless tests
  
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- Merge W5: tutorials/examples content fixes
  
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- Merge W1: predict calendar/reuse/seasonal/warning fixes
  
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- notes: merges W1/W2/W5/W6, surface-colour root cause, open design questions
  
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- fix(plot): the categorical line path lists its legend in category order
  
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- fix(plotly): name every hoverable data trace like its legend entry; keep animated legends complete
  
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- test: account for transform= in the panel roster; the date axis uses the concise formatter
  
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- Merge W4a: forecast/truth/time-axis review fixes
  
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- fix(animate): keep every observation, move every morph frame, show callback titles
  
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- fix(cluster): reject flat model kwargs in a cluster dict spec instead of dropping them
  
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- Merge fix/1.1-release-review (69c1ff7d) into the animation-core fixes
  
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- fix(plot): an explicit legend=False wins over names=
  
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- Merge branch 'fix/1.1-release-review' into worktree-agent-a551b1e7532902c98
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- Merge branch 'fix/1.1-release-review' into worktree-agent-a1cf9c0c41c2b7f27
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- Merge branch 'fix/1.1-release-review' into worktree-agent-aa4e8f5b24e5bb360
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- Merge W7: align/impute/manip fixes, pipeline cluster replay, warning attribution
  
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- fix(transform): polars frames work; datatype checks via the shared helpers
  
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- fix(plotly): tag animated data legend proxies hyp_legend_proxy, not the forecast-key tag
  
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- Merge branch 'fix/1.1-release-review' into worktree-agent-a02d608da03be1c9a
  
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- Merge W10: flat cluster spec keys raise; legend=False wins over names=
  
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- fix(matplotlib): keep label_alpha as the label box's own alpha
  
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- fix(animate): keep line reveal timing on the refined grid; labels follow the drawn window
  
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- docs(plot): docstring for _palette_continuation's sample helper (GH #276 docstring gate)
  
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- notes: merge status, full-suite result, CHANGELOG drafts backup
  
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- Merge W3 batch 1: plotly markers, hue alpha, hover names, cells, animation parity
  
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- test(animate): state the chemtrails/hue-window/unequal-length audit checks in drawn-grid rows
  
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- fix(plotly): animated continuous hue travels with the data (3-D colour slices, 2-D colour-bin traces)
  
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- fix(plot): record the palette colours and legend ranks on a plotly figure before it is shown; route label arrays through numpy
  
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- fix(plotly): 3-D data lines render at the requested width; animations default to the documented 1 pt
  
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- fix(plotly): clip the 3-D density volume grid to the cube so its edges stay crisp
  
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- fix(plotly): Play/Pause controls sit below a visible x axis' tick labels and title
  
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- docs(plotly): trail-trace bookkeeping comments name hyp_trail_index and colour-bin trails
  
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  171e74a
- Merge W4b: palettes, markers at samples, labels, legends, panels, ax= composition
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  5755324
- Merge fix/1.1-release-review (57553242) into the animation-core fixes
  
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- fix(specs): reject flat model kwargs in every dispatcher's dict spec instead of dropping them
  
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- Merge branch 'fix/1.1-release-review' into worktree-agent-aa9afcc4679e0cd04
  
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- test(animate): animated observation markers land exactly on the refined grid's observation vertices
  
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- test(plotly): hierarchy width test accounts for the 3-D GL width compensation
  
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- Merge branch 'fix/1.1-release-review' into worktree-agent-a02d608da03be1c9a
  
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- test(plotly): marker=/markers= on a line style marks only the observations
  
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- Merge W11: flat model-spec keys raise across dispatchers
  
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- docs(plot): correct unit-scale limits, slow-notice timing and title messages
  
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- docs(changelog): record the 2026-09-11 review fixes
  
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- Merge branch 'fix/1.1-release-review' into worktree-agent-a02d608da03be1c9a
  
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- notes: merge status and verification pipeline
  
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- Merge W3 batch 2: plotly animated hue, 3-D line width, density clip, controls placement
  
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- Merge W9: animation core (every observation a grid vertex, moving morphs, callback titles, companion colour, stream clamp)
  
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  db01768
- docs(changelog): animation-core and plotly animation review fixes
  
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  b630802
- fix(predict): time-policy warnings name the caller's line, once per plot call
  
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- Merge warning attribution fix for predict time policies
  
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- fix(predict): print float steps without representation noise
  
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  461d2e3
- docs: re-execute all 25 tutorials and regenerate gallery thumbnails
  
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- notes: Colab plotly-default lesson
  
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- notes: verification pipeline results
  
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- tour: one interactive viewer, no IFrame warning (fresh-Colab check)
  
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- notes: Colab and CI status at e684d7cd
  
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- notes: final Colab and CI results
  
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- notes: final CI result for the candidate
  
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Commits on Sep 12, 2026
- fix: start an animated forecast at the frame's drawn endpoint
  
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- fix: regenerate the animate_forecast gallery thumbnail with the others
  
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  9f26b99
- test: cover serial/window reveals and model comparisons for the forecast anchor
  
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  9b881ee
- notes: record the stale animated-forecast clips and the masked-exit-status trap
  
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  0efe4d9
- fix: anchor a regrouped animation's forecast on its drawn head too
  
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  6f2cfd9
- notes: record the regrouped-reveal gap and the probes that closed it
  
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  e17ae0f
- docs: regenerate the animated-forecast clips under the fixed anchor
  
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  c433b8f
- notes: candidate c433b8f0 verified locally -- pipeline, tour, scope checks
  
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  ba8ae06
- notes: fresh Colab run at c433b8f0, and the ANIM-forecast legend-proxy finding
  
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  a23e4b7
- notes: hover contract re-checked on the animated-forecast figure; Colab viewer close verified
  
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  6af09ef
- notes: third form of the masked-error trap (gh api escape sequences + suppressed stderr)
  
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- notes: CI 17/17 success at c433b8f0, and the verified handover state
  
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Commits on Oct 4, 2026
- Move project notes into compound lessons
  
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Commits on Oct 8, 2026
- plotly: name nested-list leaves by their group; 3-D observation markers at matplotlib size
  
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  a4b146a
- tour: make the flagged visual cases reviewable from their pictures
  
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  b240258
- Raise core dependency floors to the first releases with cp310-cp313 wheels
  
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  183de73
- market_sectors: read XOM shares from Exxon Mobil Corp (CIK 34088)
  
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  8d02cb8
- notes: 2026-10-08 visual sign-off round -- verdicts, decisions, pending integration
  
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  b851358
- describe: 'average' is the mean of the per-dataset curves; show=False returns the figure
  
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  c1b7adc
- describe: regression test for a bare array with format_data=False
  
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  888e231
- matplotlib: no gridlines on axis_scale='data' axes, matching plotly
  
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  279cd73
- plot docstring: datetime t= on a flat list, and animated plotly file size
  
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  ddd98ae
- Reveal animated truth= rows as the drawn forecast reaches them
  
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  cb0f9a9
- Continue the palette past observed colours for default forecast groups
  
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  387e770
- ci: apt installs skip recommends and retry, so a slow mirror can't time out docs-clean
  
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  bdbcebf
- docs: re-execute all 25 tutorials on the integrated release fixes
  
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  5dda619
- docs: regenerate the market_sectors gallery thumbnail (XOM history from 2009)
  
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  5520987
- tour: LDA text plots list each document's plotted position instead of piling labels
  
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- notes: integration and verification at 5520987b/ea7f90a2; round-2 review page
  
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Commits on Oct 9, 2026
- explore: hover labels open toward the axes centre; tour GUI case opens its window
  
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  ea7a5f4
- scripts: one statement per line in the GUI screencast recorder (ruff)
  
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  a5c8393
- tour: show a cell's second table as plain HTML so Colab's table script doesn't throw
  
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  4c762c0
- notes: round 2, GUI screencast, final candidate 4c762c0c verified
  
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- scripts: GUI recorder logs the pointer position per frame and always writes frames.json
  
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  60e0595
- docs: post_build looks for the site under $READTHEDOCS_OUTPUT/html
  
  jeremymanning
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  claude
  committed
  4e0dbae
- docs: fix defects found in the built site (gallery cards, duplicate outputs, dark theme, phone width, console errors)
  
  jeremymanning
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  committed
  0ad2a36
- docs: drop hierarchy.rst's own contents directive (furo renders it as an ERROR box)
  
  jeremymanning
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  claude
  committed
  998581d
- docs(api): fix reStructuredText markup leaking into the rendered API pages
  
  jeremymanning
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  claude
  committed
  09f6e8b
- test(docs): scan the built API pages for leaked markup
  
  jeremymanning
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  committed
  61b5cda
- docs: tutorial setup cell collapsed under the title; one Methods/Attributes table per class
  
  jeremymanning
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  committed
  40ea317
- lessons: check every built docs page in a browser (checker attached)
  
  jeremymanning
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  claude
  committed
  7a24086
- docs: tutorials-page teaser GIFs at their native 200px (they were stretched to 400)
  
  jeremymanning
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  claude
  committed
  d21e034
- notes: docs site checked page by page; final candidate d21e0340 verified
  
  jeremymanning
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  claude
  committed
  52d2b7c
- docs: link the changelog from the docs home page and the 1.1 release notes; bring the notes up to date
  
  jeremymanning
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  claude
  committed
  f5a0af2
- fix: describe sweeps a reducer instance's dimensionality; sklearn clone works on hyp.Pipeline; isotropic docstring
  
  jeremymanning
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  claude
  committed
  33810c6
- describe: reduce=None raises instead of drawing a flat 1.0 curve
  
  jeremymanning
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  committed
  9648e25
- scoring: rank complete models only; align truth=/mask= by label
  
  jeremymanning
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  claude
  committed
  3121910
- auto-install: check installed extras against their declared versions
  
  jeremymanning
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  claude
  committed
  b2d35ad
- notes: release notes cover the red-team fixes; checklist no longer names a stale candidate notebook
  
  jeremymanning
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  claude
  committed
  f4ea89c
- scoring: label checks go through the shared datatype helpers
  
  jeremymanning
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  0585a5a
- docs: re-execute the tutorials the scoring and describe fixes touch
  
  jeremymanning
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  committed
  e95777f
- tests: the multibyte render script gives up on a browser that never answers
  
  jeremymanning
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  committed
  a0c30a1
- notes: red-team findings fixed, sign-off recorded, re-cut plan
  
  jeremymanning
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  claude
  committed
  4d84983
- release: date 1.1.0 for the re-cut (2026-10-09)
  
  jeremymanning
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  claude
  committed
  fc372c2
- tests: the live Kaggle load skips on a network outage, like the FiveThirtyEight loads
  
  jeremymanning
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  claude
  committed
  cb0c543
- tests: a stalled render script reports where it is
  
  jeremymanning
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  committed
  54c89af
- tests: the render script exits as soon as it has its verdict
  
  jeremymanning
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  committed
  75d6c72

Commits

Commits on Sep 6, 2026

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