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Pull requests: DataBiosphere/azul

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Pull requests list

Fix: Inconsistent ordering of response properties on /index/{entity_type} endpoint (#8078)
#8107 opened Jun 11, 2026 by nadove-ucsc Contributor • Draft 100+
1
@achave11-ucsc @nadove-ucsc
3
Promotion 2026-06-09 prod (#8093) backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component deploy:runner [process] PR requires deploying `runner` component deploy:shared [process] PR requires deploying `shared` component mirror:partial [process] PR allows for mirroring a specific source or catalog mirror:prod [process] PR requires mirroring prod reindex:prod [process] PR requires reindexing prod upgrade [process] PR includes commit requiring manual upgrade
#8106 opened Jun 11, 2026 by dsotirho-ucsc Contributor Loading…
18 of 69 tasks
1
@dsotirho-ucsc
2
Promotion 2026-06-09 anvilprod (#8093) backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component deploy:runner [process] PR requires deploying `runner` component deploy:shared [process] PR requires deploying `shared` component upgrade [process] PR includes commit requiring manual upgrade
#8105 opened Jun 11, 2026 by dsotirho-ucsc Contributor Loading…
18 of 79 tasks
1
@dsotirho-ucsc
2
Fix: S3 log forwarder timeout (#8050)
#8100 opened Jun 10, 2026 by nadove-ucsc Contributor Loading… 100+
1
@hannes-ucsc @nadove-ucsc
3
Validate APATs offline using outsourced KMS public key (#8091)
#8094 opened Jun 9, 2026 by hannes-ucsc Member Loading… 100+
@hannes-ucsc
2
Fix: False-positive SQL Injection finding (DataBiosphere/azul-private#387)
#8089 opened Jun 8, 2026 by achave11-ucsc Member Loading… 100+
@achave11-ucsc
5
Fix: Failures mirroring files in dev catalog dcp3 (#7646) 1 review [process] Lead requested changes once upgrade [process] PR includes commit requiring manual upgrade
#8086 opened Jun 8, 2026 by dsotirho-ucsc Contributor Loading… 100+
1
@hannes-ucsc @dsotirho-ucsc
10
Security tokens are logged verbatim (DataBiosphere/azul-private#377) sandbox [process] Resolution is being verified in sandbox deployment
#8085 opened Jun 8, 2026 by hannes-ucsc Member Loading… 100+
@hannes-ucsc @dsotirho-ucsc
9
Fix: File.size should not be optional (#8024) API API change affecting callers
#8081 opened Jun 3, 2026 by nadove-ucsc Contributor • Draft 100+
1
@achave11-ucsc @nadove-ucsc
4
Migrate to native GitHub issue priorities (#8044) 1 review [process] Lead requested changes once
#8076 opened Jun 2, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
11
Organize curl downloads by dataset (#7926)
#8056 opened May 27, 2026 by dsotirho-ucsc Contributor • Draft 100+
1
@dsotirho-ucsc
3
Fix: Redundant implementations of file URLs and mirror URIs (#8042)
#8043 opened May 21, 2026 by nadove-ucsc Contributor • Draft 100+
1
@nadove-ucsc
2
Fix: curl manifest futilely includes external LungMAP files (#8027) 3 reviews [process] Lead requested changes thrice
#8030 opened May 15, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
23
Cover query service with mypy (#6821) 1 review [process] Lead requested changes once partial [process] PR is does not completely resolve associated ticket
#7916 opened Apr 8, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
8
Fix: Manifest IT fails with pinned seed (#7835)
#7850 opened Mar 10, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
7
Fix: OpenSearch queries are huge (azul-private#316) 1 review [process] Lead requested changes once
#7775 opened Feb 12, 2026 by nadove-ucsc Contributor Loading… 100+
@nadove-ucsc
13
Fix: Eliminate uses of requests library (#7633) 1 review [process] Lead requested changes once partial [process] PR is does not completely resolve associated ticket
#7745 opened Feb 4, 2026 by achave11-ucsc Member Loading… 100+
1
@achave11-ucsc
48
OpenSearch queries include many redundant source IDs (#7644)
#7727 opened Jan 29, 2026 by nadove-ucsc Contributor • Draft 100+
1
@nadove-ucsc
1
Fix: Accumulator overflow during aggregation (#6793) 1 review [process] Lead requested changes once API API change affecting callers reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#7641 opened Dec 12, 2025 by dsotirho-ucsc Contributor Loading… 100+
1
@dsotirho-ucsc
47
Make GitLab instance CIS level 2 compliant (#5990)
#6694 opened Nov 8, 2024 by dsotirho-ucsc Contributor • Draft 100+
1
@dsotirho-ucsc
2
Fix: Can't use curl to download a single manifest in one invocation (#5918) 4+ reviews [process] Lead requested changes four times or more API API change affecting callers
#6099 opened Mar 26, 2024 by dsotirho-ucsc Contributor Loading… 100+
1
@dsotirho-ucsc
107
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