Skip to content

{2025.06}[foss/2025a] Relion CPU dependencies #1635

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
jpecar wants to merge 7 commits into
base: main
Choose a base branch
from
Open

{2025.06}[foss/2025a] Relion CPU dependencies #1635

Changes from all commits
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
ed27798
{2026.06}[foss/2025a] Relion CPU dependencies
jpecar Sep 10, 2026
58f3b48
Update eessi-2025.06-eb-5.4.0-2025a.yml
jpecar Sep 10, 2026
47fb725
Update eessi-2025.06-eb-5.4.0-2025a.yml
jpecar Sep 10, 2026
b240c89
Update eessi-2025.06-eb-5.4.0-2025a.yml
jpecar Sep 11, 2026
af6a316
Update eessi-2025.06-eb-5.4.0-2025a.yml
jpecar Sep 16, 2026
8e760f4
Merge branch 'main' into relion51_cpu_deps
jpecar Sep 17, 2026
27cb6bc
Add cxxopts
jpecar Sep 21, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
116 changes: 116 additions & 0 deletions easystacks/software.eessi.io/2025.06/eessi-2025.06-eb-5.4.0-2025a.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,122 @@
easyconfigs:
- MEME-5.5.9-gompi-2025a.eb
- OpenFOAM-v2506-foss-2025a.eb
- ATK-2.38.0-GCCcore-14.2.0.eb
- Abseil-20250512.1-GCCcore-14.2.0.eb
- Cbc-2.10.12-foss-2025a.eb
- Cgl-0.60.9-foss-2025a.eb
- Clp-1.17.10-foss-2025a.eb
- CoinUtils-2.11.12-GCC-14.2.0.eb
- GST-plugins-bad-1.26.6-GCCcore-14.2.0.eb
- GST-plugins-base-1.26.6-GCCcore-14.2.0.eb
- GStreamer-1.26.6-GCCcore-14.2.0.eb
- GTK3-3.24.43-GCCcore-14.2.0.eb
- GTK4-4.20.2-GCCcore-14.2.0.eb
- Graphene-1.10.8-GCCcore-14.2.0.eb
- Osi-0.108.11-GCC-14.2.0.eb
- PuLP-3.3.0-foss-2025a.eb
- PyCairo-1.28.0-GCCcore-14.2.0.eb
- PyGObject-3.54.2-GCCcore-14.2.0.eb
- PyQt-builder-1.18.1-GCCcore-14.2.0.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26470
from-commit: 632d5f0c2e1da117589535d5711a9b187b1d1380
- Qt5-5.15.16-GCCcore-14.2.0.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26470
from-commit: 632d5f0c2e1da117589535d5711a9b187b1d1380
- PyQt5-5.15.11-GCCcore-14.2.0.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26470
from-commit: 632d5f0c2e1da117589535d5711a9b187b1d1380
- at-spi2-atk-2.38.0-GCCcore-14.2.0.eb
- at-spi2-core-2.56.2-GCCcore-14.2.0.eb
- cargo-c-0.10.13-GCCcore-14.2.0.eb
- ctffind-4.1.14-foss-2025a.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26470
from-commit: 632d5f0c2e1da117589535d5711a9b187b1d1380
- einops-0.8.1-GCCcore-14.2.0.eb
- flit-core-3.12.0-GCCcore-14.2.0.eb
- gmpy2-2.2.0-GCCcore-14.2.0.eb
- libcroco-0.6.13-GCCcore-14.2.0.eb
- libepoxy-1.5.10-GCCcore-14.2.0.eb
- libnotify-0.8.7-GCCcore-14.2.0.eb
- librsvg-2.61.0-GCCcore-14.2.0.eb
- morphosamplers-0.0.16-gfbf-2025a.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26470
from-commit: 632d5f0c2e1da117589535d5711a9b187b1d1380
- optree-0.18.0-GCCcore-14.2.0.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26470
from-commit: 632d5f0c2e1da117589535d5711a9b187b1d1380
- parameterized-0.9.0-GCCcore-14.2.0.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26470
from-commit: 632d5f0c2e1da117589535d5711a9b187b1d1380
- protobuf-python-6.31.1-GCCcore-14.2.0.eb
- protobuf-31.1-GCCcore-14.2.0.eb
- pydantic-2.11.7-GCCcore-14.2.0.eb
- pytest-flakefinder-1.1.0-GCCcore-14.2.0.eb
- pytest-rerunfailures-16.1-GCCcore-14.2.0.eb
- pytest-shard-0.1.2-GCCcore-14.2.0.eb
- pytest-subtests-0.15.0-GCCcore-14.2.0.eb
- pyzstd-0.19.0-GCCcore-14.2.0.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26470
from-commit: 632d5f0c2e1da117589535d5711a9b187b1d1380
- shared-mime-info-2.4-GCCcore-14.2.0.eb
- sympy-1.14.0-gfbf-2025a.eb
- tlparse-0.4.3-GCCcore-14.2.0.eb
- typing-extensions-4.14.0-GCCcore-14.2.0.eb
- unittest-xml-reporting-3.1.0-GCCcore-14.2.0.eb
- wxWidgets-3.2.9-GCCcore-14.2.0.eb
- xpdf-4.06-GCCcore-14.2.0.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26470
from-commit: 632d5f0c2e1da117589535d5711a9b187b1d1380
- ctffind-4.1.14-foss-2025a.eb:
options:
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/26470
from-commit: 632d5f0c2e1da117589535d5711a9b187b1d1380
- utf8proc-2.10.0-GCCcore-14.2.0.eb
- googlebenchmark-1.9.4-GCCcore-14.2.0.eb
- RE2-2024-07-02-GCCcore-14.2.0.eb
- grpcio-1.76.0-GCCcore-14.2.0.eb
- Arrow-22.0.0-gfbf-2025a.eb
- mrcfile-1.5.4-gfbf-2025a.eb
- absl-py-2.3.1-GCCcore-14.2.0.eb
- tensorboard-2.20.0-gfbf-2025a.eb
- libclc-20.1.8-GCCcore-14.2.0.eb
- tcsh-6.24.16-GCCcore-14.2.0.eb
- wrapt-1.17.2-GCCcore-14.2.0.eb
- HMMER-3.4-gompi-2025a.eb
- PyHMMER-0.11.3-gompi-2025a.eb
- numba-0.62.0-foss-2025a.eb
- umap-learn-0.5.9.post2-foss-2025a.eb
- bcrypt-4.3.0-GCCcore-14.2.0.eb
- OpenGL-2025.09-GCCcore-14.2.0.eb
- PyOpenGL-3.1.10-GCCcore-14.2.0.eb
- PBZIP2-1.1.13-GCCcore-14.2.0.eb
- configurable-http-proxy-5.0.1-GCCcore-14.2.0.eb
- PyQt5-5.15.11-GCCcore-14.2.0.eb
- PycURL-7.45.6-GCCcore-14.2.0.eb
- QtPy-2.4.3-GCCcore-14.2.0.eb
- aiohttp-3.12.13-GCCcore-14.2.0.eb
- Greenlet-3.2.3-GCCcore-14.2.0.eb
- jupyter-server-proxy-4.4.0-GCCcore-14.2.0.eb
- nbclassic-1.3.1-GCCcore-14.2.0.eb
- jupyter-resource-usage-1.1.1-GCCcore-14.2.0.eb
- psycopg-3.2.9-GCCcore-14.2.0.eb
- SQLAlchemy-2.0.41-GCCcore-14.2.0.eb
- JupyterHub-5.3.0-GCCcore-14.2.0.eb
- prompt-toolkit-3.0.52-GCCcore-14.2.0.eb
- jupyter-bash-kernel-0.9.3-GCCcore-14.2.0.eb
- Jupyter-bundle-20250702-GCCcore-14.2.0.eb
- Qtconsole-5.7.0-GCCcore-14.2.0.eb
- napari-0.6.6-foss-2025a.eb
- cxxopts-3.0.0.eb

@bedroge bedroge Sep 21, 2026

Copy link
Copy Markdown
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Easyconfigs built with the SYSTEM toolchain can go into a separate file eessi-2025.06-eb-5.4.0-001-system.yml, see e.g. https://github.com/EESSI/software-layer/blob/main/easystacks/software.eessi.io/2025.06/eessi-2025.06-eb-5.3.1-001-system.yml.

@bedroge bedroge Sep 21, 2026

Copy link
Copy Markdown
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

While doing that, could you also sync your branch with the main branch, to ensure that it picks up the updated hooks file (it's using a specific commit that is listed in https://github.com/EESSI/software-layer/blob/main/bot/software_layer_scripts_commit, and this file just got updated).

- BDBag-1.8.0-foss-2025a.eb
- Block-1.5.3-20200525-foss-2025a.eb
- CheMPS2-1.8.12-foss-2025a.eb
Expand Down
Loading