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PROD -> release 20/08 - #198

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GiorgiaBorgmann wants to merge 44 commits into
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PROD -> release 20/08#198
GiorgiaBorgmann wants to merge 44 commits into
mainfrom
develop

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@GiorgiaBorgmann

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markgeejw and others added 30 commits June 23, 2026 09:05
Co-authored-by: markgeejw <19712422+markgeejw@users.noreply.github.com>
Regenerate the predictor OpenAPI bundle (source/_static/js/predictorSpec.js)
from openprotein-api: rename matern21 -> matern12, add matern52, periodic,
rational_quadratic, and the period/alpha kernel hyperparameters.

Co-authored-by: Christian Bepler <cbepler@ne47.bio>
folding is a batch call (N complexes -> N structures) like the
foundational models; the output noun is `structures`.
* chore: enable -W strict sphinx build gate

Promotes sphinx warnings to errors (--keep-going to still report all in one
pass) so doc-link rot and docs/client-API drift fail the build.

HOLD: do not merge until openprotein-docs's pixi.lock is bumped to an
openprotein-python release containing the docstring fixes (PR #222) and
ESMIF1Model. Verified clean against the client's develop branch; against the
currently pinned 0.13.0 this gate fails on 13 pending warnings.

* fix: warnings
added system level prompts at after 'prompt sampling explained' section
Added section on 'scoring predictions within a table'
updated to /cluster-6.gif
d2phap and others added 12 commits August 12, 2026 17:42
updated term 'system prompt' to 'antibody prompt'
fixed formatting and text capitalization
updated screenshot with new UI
update system prompt screenshot with new ui
update ui screenshot
update text
…-embedding

Predict cluster annotation embedding docs update
@markgeejw markgeejw closed this Aug 20, 2026
@markgeejw

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superseded by #200

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6 participants