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Achievement: Pair Extraordinairex2Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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Achievement: Pair Extraordinairex2Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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  1. EBI-Metagenomics/assembly_uploader EBI-Metagenomics/assembly_uploader Public

    Upload of metagenome and metatranscriptome assemblies to ENA

    Python 1

  2. EBI-Metagenomics/microeuks-gene-benchmarker EBI-Metagenomics/microeuks-gene-benchmarker Public

    Scripts to benchmark the outputs from gene annotation tools for microbial eukaryotes

    Nextflow

  3. EBI-Metagenomics/pipeline-v5 EBI-Metagenomics/pipeline-v5 Public archive

    This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

    HTML 24 22

  4. EBI-Metagenomics/holofood-course EBI-Metagenomics/holofood-course Public

    ReadTheDocs/Sphinx documentation source for the "Organisation and utilisation of hologenomic datasets" Holofood course, 2022

    HTML 3

  5. EBI-Metagenomics/datascout EBI-Metagenomics/datascout Public

    This repo queries and gather data from different resources which can then be used to run bulk automatised annotation of microbial genomes.The different types of data are: OrthoDB and UniProt orthol…

    Standard ML