Feature/update to dbcan3#500
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madeline-scyphers merged 6 commits intodevfrom Apr 30, 2026
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Using the run_dbcan tooling, update our use of dbcan from dbcan2 to dbcan3. We will use the easysubstrate call to run the entire run_dbcan pipeline. This initial step just consumes the first stages output and does not include the CGC or easysubstrate in our annotation or summarize. Add parsing for run_dbcan output to incorporate into raw-annotations.tsv Add ability for dram to check DB version with added version file. This is an optional, per database add-on that is currently only being used with dbcan to ensure users are updated to dbcan3.
madeline-scyphers
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feat: Update dbcan to dbcan3 using run_dbcan tool
Using the run_dbcan tooling, update our use of dbcan from
dbcan2 to dbcan3. We will use the easysubstrate call to run the
entire run_dbcan pipeline. This initial step just consumes the first
stages output and does not include the CGC or easysubstrate in our
annotation or summarize.
Add parsing for run_dbcan output to incorporate into raw-annotations.tsv
Add ability for dram to check DB version with added version file. This
is an optional, per database add-on that is currently only being used
with dbcan to ensure users are updated to dbcan3.