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1. amirgroup-codes/ProtoMech amirgroup-codes/ProtoMech Public

   (ICML 2026) Official code repository for Protein Circuit Tracing via Cross-layer Transcoders

   Python 13 3

2. amirgroup-codes/cryoSENSE amirgroup-codes/cryoSENSE Public

   (CVPR 2026) Compressive Sensing Enables High-throughput Microscopy with Sparse and Generative Priors (Diffusion Model) on the Protein Cryo-EM Image Manifold

   Python 3 1

3. amirgroup-codes/AstroAgents amirgroup-codes/AstroAgents Public

   AstroAgents: Multi-Agent AI for Hypothesis Generation from Mass Spectrometry Data

   Python 15 2

4. amirgroup-codes/LifeTracer amirgroup-codes/LifeTracer Public

   LifeTracer: comprehensive Python package for 2D gas chromatography analysis and signature discovery (PNAS Nexus)

   Python 2

5. protmech/protmech.github.io protmech/protmech.github.io Public

   ProtoMech - Protein Circuit Tracing via Cross-layer Transcoders

   JavaScript

6. amirgroup-codes/astra amirgroup-codes/astra Public

   ASTRA : Autonomous Multi-Agent Reconstruction of Prebiotic Reaction Networks Reveals Organizational Features of Amino Acid Synthesis

   Python