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DataJoint 2.1 - #1339

Merged

dimitri-yatsenko merged 131 commits into

Feb 3, 2026

Merged

DataJoint 2.1#1339
dimitri-yatsenko merged 131 commits into
masterfrom
pre/v2.1

Commits on Jan 17, 2026
Commits on Jan 18, 2026
Commits on Jan 19, 2026
Commits on Jan 20, 2026
- docs: Remove multi-backend-testing.md (moved to datajoint-docs)
  
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  4797151
- fix: PostgreSQL adapter bugs for multi-backend support
  
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  05d2512
- fix: Clean up PostgreSQL enum types when dropping tables
  
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  ab99193
- fix: PostgreSQL adapter bugs for multi-backend support
  
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  d8b15c5
- fix: Clean up PostgreSQL enum types when dropping tables
  
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  e54e4a7
- style: Fix linting issues
  
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  be7d079
- fix: Escape % in LIKE patterns for MySQL
  
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  8a8423b
- fix: use single quotes for SQL literals (PostgreSQL compatibility)
  
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  6b2b7e4
- fix: use PostgreSQL-specific queries for dependencies loading
  
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  0469a72
- fix: convert double-quoted defaults to single quotes
  
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  a4ed877
- fix: generate COMMENT ON COLUMN for PostgreSQL blob codecs
  
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  e56a5a6
- fix: escape single quotes in PostgreSQL COMMENT statements
  
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- fix: PostgreSQL compatibility in jobs.py
  
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  3c34d31
- fix: add current_user_expr() for backend-agnostic user retrieval
  
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  aa78497
- fix: use adapter for identifier quoting in SQL generation
  
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  c795c3a
- fix: convert memoryview to bytes for PostgreSQL blob unpacking
  
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  f113f92
- fix: make table name quoting backend-agnostic
  
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  b1ef634
- refactor: move get_master regex to adapter methods
  
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  e49a2ef
- fix: use adapter.quote_identifier in metaclass full_table_name
  
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  1ffb157
- fix: strip both backticks and double quotes from lineage table names
  
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  6506bad
- fix: handle PostgreSQL enum types and USER-DEFINED columns
  
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  56a8df4
- fix: address CI lint and test failures
  
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  6576b43
- style: apply ruff-format formatting fixes
  
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  b7e800b
- Merge origin/pre/v2.1 into fix/postgresql-adapter-bugs
  
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  86bd95e
- fix: use adapter quoting in autopopulate progress()
  
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  fd4e011
- fix: handle psycopg2 auto-deserialized JSON in codecs
  
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  d2e89ba
- fix: PostgreSQL compatibility improvements for DataJoint 2.1
  
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  bc245d3
- fix: include table_comment in PostgreSQL get_table_info_sql
  
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  ae2dc57
- feat: add DJ_USE_TLS environment variable support
  
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  fd31b22
- fix: PostgreSQL compatibility for diagrams and date functions
  
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  2f61cbd
- fix: improve PostgreSQL SQL function translations
  
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  79e712b
- fix: handle PostgreSQL double-quote format in _get_tier
  
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  30b7130
Commits on Jan 22, 2026
- fix: Remove deprecated ___ separator support
  
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  9775d0a
- feat: Add singleton tables (empty primary keys)
  
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  864b258
- fix: PostgreSQL compatibility for singleton tables
  
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  996e820
- style: Format test file with ruff
  
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  25354ad
- chore: Bump version to 2.1.0a4
  
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Commits on Jan 23, 2026
- fix: Backend-agnostic JSON path expressions
  
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  d3c7afb
- chore: Bump version to 2.1.0a5
  
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  215bc9c
- refactor: Remove boolean_true_literal, use TRUE for both backends
  
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  5010b85
- Merge pull request #1341 from datajoint/feat/singleton-tables
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  e0a7c6d
- docs: fix string quoting in docstring example
  
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  648bd1a
- Merge pull request #1344 from datajoint/fix/docstring-postgresql-compat
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  1698acf
- feat(diagram): add direction, Mermaid output, and schema grouping
  
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  f98cdbf
- feat: always group diagram nodes by schema with module labels
  
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  0dd5a69
- chore: bump version to 2.1.0a6
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  903e6b2
- feat: improve schema grouping labels with fallback logic
  
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  d41b75f
- feat: add collapse() method for high-level pipeline views
  
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  80489fc
- fix: properly merge diagrams from different schemas
  
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  3292a06
- fix: diagram improvements for collapse and display
  
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  c3c4c0f
- fix: collapse chaining for multiple collapsed diagrams
  
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  ba1a237
- fix: reset alias node counter on dependencies clear
  
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  26264d4
- fix: don't collapse fresh diagrams that were never combined
  
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  09cf50d
- fix: use database schema name for collapsed nodes when module is ambiguous
  
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  77ebfb5
- fix: place collapsed nodes inside schema clusters for proper layout
  
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  de00340
- feat: change default diagram direction from TB to LR
  
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  4d6b7ac
- fix: collapsed nodes show only table count, not redundant name
  
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  9e87106
- refactor: simplify collapse logic to use single _expanded_nodes set
  
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Commits on Jan 24, 2026
- fix: break long line in diagram.py to pass lint
  
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  e59eeb3
- style: apply ruff format to diagram.py
  
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  810ceee
- Merge pull request #1345 from datajoint/feat/diagram-improvements
  MilagrosMarin
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  a8b0734
- perf: lazy-load deepdiff and tqdm in autopopulate
  
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  4f468d4
- chore: remove unused _RenameMap class
  
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  2e24b9e
- refactor: split builtin_codecs.py into package
  
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  86f5936
- Merge pull request #1349 from datajoint/perf/lazy-load-autopopulate
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Commits on Jan 25, 2026
- docs: fix terminology - replace "external" with "in-store"
  
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  9c8b196
Commits on Jan 27, 2026
- Merge master into pre/v2.1
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  ad07bde
- chore: bump version to 2.1.0a8
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  885cbb0
- Merge master into pre/v2.1
  
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  06e709f
Commits on Jan 28, 2026
- Merge master into pre/v2.1
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  82a9223
Commits on Jan 30, 2026
- add packaging test
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  93838d3
- use hatchling instead of setuptools to avoid missing building with missing packages
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  0183f44
- Merge pull request #1358 from d-v-b/chore/fix-packaging
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  243c9e0
- Merge remote-tracking branch 'origin/master' into pre/v2.1
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  65d1b08
- Merge branch 'perf/jobs-table-index' into pre/v2.1
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Commits on Feb 3, 2026
- Merge master into pre/v2.1
  
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  b60287f
- chore: Remove unnecessary runtime dependencies
  
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  217171a
- docs: Convert Sphinx-style docstrings to NumPy-style
  
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  c999b5f
- Merge pull request #1378 from datajoint/docs/numpy-docstrings
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  715e1d1
- Merge branch 'master' into pre/v2.1
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  d3ad39c
- Merge branch 'pre/v2.1' of github.com:datajoint/datajoint-python into pre/v2.1
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  f9ee1fc