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Move some files from source_io to source_base and source_cell - #7789

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mohanchen wants to merge 12 commits into
deepmodeling:developfrom
mohanchen:2026-08-08-b
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Move some files from source_io to source_base and source_cell#7789
mohanchen wants to merge 12 commits into
deepmodeling:developfrom
mohanchen:2026-08-08-b

fix small bugs

0865199
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