Update templates to version 0.12

.codecov.yml

@@ -0,0 +1,26 @@
+# Codecov configuration
+# https://docs.codecov.com/docs/codecov-yaml
+
+github_checks:
+  annotations: true
+
+comment:
+  layout: 'reach, diff, flags, files'
+  behavior: default
+  require_changes: false
+  require_base: false
+  require_head: true
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: 1%
+        # Make project coverage informational (won't block PR)
+        informational: true
+    patch:
+      default:
+        target: auto
+        # Require patch coverage but with threshold
+        threshold: 1%

.copier-answers.yml

@@ -1,6 +1,6 @@
 # WARNING: Do not edit this file manually.
 # Any changes will be overwritten by Copier.
-_commit: v0.11.3
+_commit: v0.12.0
 _src_path: gh:easyscience/templates
 app_docs_url: https://easyscience.github.io/dynamics-app
 app_doi: 10.5281/zenodo.18877180

.github/workflows/coverage.yml

@@ -63,32 +63,8 @@ jobs:
           files: ./coverage-unit.xml
           token: ${{ secrets.CODECOV_TOKEN }}
 
-  # Job 2: Run integration tests with coverage and upload to Codecov
-  integration-tests-coverage:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Check-out repository
-        uses: actions/checkout@v6
-
-      - name: Set up pixi
-        uses: ./.github/actions/setup-pixi
-
-      - name: Run integration tests with coverage
-        run:
-          pixi run integration-tests-coverage --cov-report=xml:coverage-integration.xml
-
-      - name: Upload integration tests coverage to Codecov
-        if: ${{ !cancelled() }}
-        uses: ./.github/actions/upload-codecov
-        with:
-          name: integration-tests-job
-          flags: integration
-          files: ./coverage-integration.xml
-          token: ${{ secrets.CODECOV_TOKEN }}
-
   # Job 4: Build and publish dashboard (reusable workflow)
   run-reusable-workflows:
-    needs: [docstring-coverage, unit-tests-coverage, integration-tests-coverage] # depend on the previous jobs
+    needs: [docstring-coverage, unit-tests-coverage] # depend on the previous jobs
     uses: ./.github/workflows/dashboard.yml
     secrets: inherit

.github/workflows/dashboard.yml

@@ -32,9 +32,13 @@ jobs:
       - name: Set up pixi
         uses: ./.github/actions/setup-pixi
 
+      # Install badgery into the active Pixi environment without modifying
+      # pixi.toml/pixi.lock. Using `pixi add` here re-solves the whole project
+      # and rebuilds the local editable package, which can cause intermittent
+      # Linux CI failures (`Text file busy`, os error 26).
       - name: Install badgery
         shell: bash
-        run: pixi add --pypi --git https://github.com/enhantica/badgery badgery
+        run: pixi run python -m pip install git+https://github.com/enhantica/badgery
 
       - name: Run docstring coverage and code complexity/maintainability checks
         run: |

.prettierignore

@@ -25,6 +25,9 @@ docs/docs/assets/
 # Node
 node_modules
 
+# Tox
+.tox
+
 # Misc
 .benchmarks
 .cache

docs/docs/assets/stylesheets/extra.css

@@ -200,7 +200,14 @@ label.md-nav__title[for="__drawer"] {
 
 /* Change the overall width of the page */
 .md-grid {
-  max-width: 1280px;
+  max-width: 116em;
+}
+
+/* Keep prose line length stable when sidebars are hidden at narrower widths */
+.md-main .md-content > .md-content__inner {
+  width: min(100%, 40.5em);
+  margin-left: auto !important;
+  margin-right: auto !important;
 }
 
 /* Needed for mkdocs-jupyter to show download and other buttons on top of the notebook */

docs/docs/tutorials/components.ipynb

@@ -192,7 +192,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.14.4"
+   "version": "3.14.5"
   }
  },
  "nbformat": 4,

docs/mkdocs.yml

@@ -156,7 +156,18 @@ plugins:
             show_root_heading: true
             show_root_full_path: false
             show_submodules: true
-            show_source: true
+            show_source: false
+            show_bases: false
+            # Uncomment when the project depends on `easyscience` and inherited
+            # EasyScience base-class members should be shown in the API docs.
+            preload_modules:
+              - easyscience
+            inherited_members: true
+            show_category_heading: true
+            merge_init_into_class: true
+            docstring_options:
+              ignore_init_summary: true
+            summary: true
   - search
 
 # Determines additional directories to watch when running mkdocs serve
@@ -192,6 +203,7 @@ nav:
           - Component collection: tutorials/component_collection.ipynb
           - Convolution: tutorials/convolution.ipynb
           - Detailed balance: tutorials/detailed_balance.ipynb
+          - DeltaLorentz: tutorials/delta_lorentz.ipynb
           - Diffusion model: tutorials/diffusion_model.ipynb
           - Sample model: tutorials/sample_model.ipynb
           - Instrument model: tutorials/instrument_model.ipynb