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Pull requests: microbiomedata/nmdc-runtime

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Pull requests list

Bump jupyter-server from 2.16.0 to 2.18.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1477 opened May 6, 2026 by dependabot Bot Loading…
Bump lxml from 5.4.0 to 6.1.0 (used in ncbi_xml_utils.py only) dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1457 opened May 4, 2026 by dependabot Bot Loading…
@sujaypatil96
3
Fix TypeError crash in changesheet validation when document ID does not exist
#1448 opened Apr 30, 2026 by Copilot AI • Draft
3 of 15 tasks
1
@eecavanna
Implement Typer-based CLI app that orchestrates Mongo migration process
#1446 opened Apr 26, 2026 by eecavanna Collaborator Loading…
8 of 17 tasks
1
@eecavanna
23
Add env triad validation to runtime
#1423 opened Apr 3, 2026 by sierra-moxon Member • Draft
7 of 14 tasks
1
Disable MongoDB authentication for local development/testing
#1394 opened Feb 16, 2026 by eecavanna Collaborator Loading…
7 of 17 tasks
1
@eecavanna
45
[WIP] Migrate to pymongo.asynchronous
#1235 opened Sep 22, 2025 by dwinston Collaborator • Draft
4 of 17 tasks
1
@dwinston
4
Document API endpoint parameters and endpoints with descriptions and examples for Swagger UI
#1228 opened Sep 19, 2025 by Copilot AI • Draft
1
@eecavanna
4
Add middleware that logs HTTP response time to server console
#1214 opened Sep 12, 2025 by eecavanna Collaborator Loading…
7 of 17 tasks
1
@eecavanna
5
Enable referential integrity checking within perform_mongo_updates op
#1174 opened Aug 27, 2025 by eecavanna Collaborator • Draft
6 of 17 tasks
1
@eecavanna
3
Migrate from MongoClient to AsyncMongoClient
#1145 opened Aug 14, 2025 by eecavanna Collaborator • Draft
17 tasks
1
@eecavanna
2
Fix DagsterInvalidConfigError in translate_metadata_submission_to_nmdc_schema_database test
#1067 opened Jul 13, 2025 by Copilot AI • Draft
1
@eecavanna
6
Fix Mermaid diagrams illegibility in dark mode on User Journeys page
#1066 opened Jul 13, 2025 by Copilot AI • Draft
1
@eecavanna
3
ProTip! Exclude everything labeled bug with -label:bug.