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Remove cplex from optitype module due to licensing issues - #12848

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SpikyClip:optitype_remove_cplex
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Remove cplex from optitype module due to licensing issues#12848
SpikyClip wants to merge 2 commits into
nf-core:masterfrom
SpikyClip:optitype_remove_cplex

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@SpikyClip SpikyClip commented Aug 31, 2026

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As discussed with @christopher-mohr on slack, this PR reverts the addition of cplex to avoid potential licensing issues.

  • Reverts the addition of cplex to the module and its container to avoid licensing issues.
  • Converts ext.args back to str format to make type of argument clear

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SpikyClip marked this pull request as ready for review August 31, 2026 05:34
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