fix(docs): swap caution and warning admonitions & theme update

pyproject.toml

@@ -19,7 +19,7 @@ maintainers = [
 readme = "README.md"
 requires-python = ">=3.10,<3.13"
 dependencies = [
-  "mkdocs-tacc[all] (>=1.0.4,<2.0.0)",
+  "mkdocs-tacc[all] (>=1.0.5rc2,<2.0.0)",
   "mkdocs-exclude-search (>=0.6.6,<0.7.0)",
   "mkdocs-include-markdown-plugin (>=5.1.0,<6.0.0)",
 ]

requirements.txt

@@ -115,9 +115,9 @@ mkdocs-exclude-search==0.6.6 ; python_version >= "3.10" and python_version < "3.
 mkdocs-include-markdown-plugin==5.1.0 ; python_version >= "3.10" and python_version < "3.13" \
     --hash=sha256:4a1b8d79a0e1b6fd357ca8013a6d1701c755ada4acb74ee97b0642d1afe6756e \
     --hash=sha256:e9ca188ab1d86f5fc4a6b96ce8c85acf6e25f114897868041056ec7945f29f65
-mkdocs-tacc==1.0.4 ; python_version >= "3.10" and python_version < "3.13" \
-    --hash=sha256:1029eafd35b9996e19fb560aae9d1174d4262e1e3a3c3c5ed3518f7d5cd0a16a \
-    --hash=sha256:9945a00aeb67ca27609d7a15e63e6495fe4bc404af1ac8ac4731507a814470db
+mkdocs-tacc==1.0.5rc2 ; python_version >= "3.10" and python_version < "3.13" \
+    --hash=sha256:6e5555d0235c5489d2a61c26f771b9007d5ec67e9df2ef5e9db61538192b5f19 \
+    --hash=sha256:8aeb9d126402f9cae3b88a29d4096ad3685c904acab84615f0cf6da42c8ed8c3
 mkdocs==1.4.3 ; python_version >= "3.10" and python_version < "3.13" \
     --hash=sha256:5955093bbd4dd2e9403c5afaf57324ad8b04f16886512a3ee6ef828956481c57 \
     --hash=sha256:6ee46d309bda331aac915cd24aab882c179a933bd9e77b80ce7d2eaaa3f689dd

user-guide/account-help.md

@@ -19,7 +19,7 @@ There are multiple reasons you would either want to or be required to [update yo
 3. Your citizenship changes.
 4. You receive an email from TACC requiring an annual profile update.
 
-It's possible the policies regarding email domains and Institutions have changed since the last time you either created your account or updated your profile, so you may want to review the [User Account Registration guide](https://designsafe-ci.org/user-guide/#user-account-registration) for the current guidance.
+It's possible the policies regarding email domains and Institutions have changed since the last time you either created your account or updated your profile, so you may want to review the [User Account Registration guide](/user-guide/#user-account-registration) for the current guidance.
 
 ## Additional Account Resources
 

user-guide/css/tacc/mkdocs-tacc.css

@@ -11,6 +11,7 @@
 .wy-side-nav-search .nav-name {
     font-weight: var(--medium);
     color: #565656;
+    text-transform: uppercase;
 }
 /* To give logo more horizontal space */
 .wy-side-nav-search > a {

user-guide/curating/guides.md

@@ -493,7 +493,7 @@ In addition, the release must include a README file with detailed instructions o
 
 Failure to adequately describe your software with these files may result in removal of your publication.
 
-[Read about best practices for creating CodeMeta and README files.](https://www.designsafe-ci.org/user-guide/curating/bestpractices/#research-software)
+[Read about best practices for creating CodeMeta and README files.](/user-guide/curating/bestpractices/#research-software)
 
 After adding these files, create a new release.
 

user-guide/datadepotrepo/resources.md

@@ -1,11 +1,11 @@
 # Resources for Users
 
-!!! caution "Content Undecided"
+!!! warning "Content Undecided"
     Much of this page is incomplete. We might not use this page.
 
 ## Frequently Asked Questions
 
-!!! caution "Content Undefined"
+!!! warning "Content Undefined"
     Should this introduce some F.A.Q. and/or link to it?
 
 ## Data Management Plan
@@ -14,12 +14,12 @@ Depositing your data and other resources such as documentation and research soft
 
 ## Data and Intellectual Property
 
-!!! caution "Content Undefined"
+!!! warning "Content Undefined"
     What content belongs here?
 
 ## Support and Contact Information
 
-!!! caution "Content Undefined"
+!!! warning "Content Undefined"
     Should this introduce the Support and Contact Information and/or link to it?
 
 ## DesignSafe Office Hours
@@ -37,19 +37,19 @@ CONVERGE has a series of [check sheets](https://converge.colorado.edu/resources/
 
 In addition, we suggest that users look into the [Data Curation Primers](https://datacurationnetwork.org/outputs/data-curation-primers/) from the Data Curation Network, which are "peer-reviewed, living documents that detail a specific subject, disciplinary area or curation task, and that can be used as a guidelines to curate research data. The primers include curation practices for documenting data types that while not open or recommended, are very established in the academic fields surrounding Natural Hazards research such as Matlab and Microsoft Excel.
 
-!!! caution "Needs Review"
+!!! warning "Needs Review"
     How to introduce this random link?
 
 [https://www.copyright.gov/circs/circ33.pdf](https://www.copyright.gov/circs/circ33.pdf) 
 
 ## Exemplary Datasets
 
-!!! caution "Needs Review"
+!!! warning "Needs Review"
     "Need to review this list now." — M.E.
 
 Below are examples of good organization and description for different dataset types:
 
-!!! caution "Formatting Uncertain"
+!!! warning "Formatting Uncertain"
     Should this be a nested list, a table, sub-headings and lists? Is it supposed to be [the user guide dictionaries](/user-guide/dictionary/)?
 
 * Experimental

user-guide/deleted.md

@@ -1,5 +1,5 @@
 !!! attention "This page has been deleted."
     Please use navigation panel or links below to find other content.
 
-!!! caution "Update bookmarks and links."
+!!! danger "Update bookmarks and links."
     This page is now temporary, unmaintained, and will be deleted.

user-guide/how-to-cite.md

@@ -8,7 +8,7 @@ Rathje, E., Dawson, C. Padgett, J.E., Pinelli, J.-P., Stanzione, D., Adair, A.,
 
 ## Additional Citation Information
 
-If you receive HPC allocations for use in your computational research, in addition to citing DesignSafe per the marker paper please use the following acknowledgement. We also encourage you to curate and publish simulation data results using the [Simulation Data Model](https://www.designsafe-ci.org/user-guide/curating/guides/#simulation). 
+If you receive HPC allocations for use in your computational research, in addition to citing DesignSafe per the marker paper please use the following acknowledgement. We also encourage you to curate and publish simulation data results using the [Simulation Data Model](/user-guide/curating/guides/#simulation). 
 
 <i>The authors acknowledge the Texas Advanced Computing Center (TACC) at The University of Texas at Austin for providing computational resources that have contributed to the research results reported within this paper. URL: http://www.tacc.utexas.edu</i>
 

user-guide/redirect.md

@@ -1,5 +1,5 @@
 !!! attention "This page has moved."
     Please use navigation panel or any links below to find the content.
 
-!!! caution "Update bookmarks and links."
+!!! danger "Update bookmarks and links."
     This page is now temporary, unmaintained, and will be deleted.

user-guide/tools/advanced/dsfaq.md

@@ -166,7 +166,7 @@ The Jupyter Notebook is a web application that allows you to create and share do
 ///
 /// details | What do people do with Jupyter?
 
-Many people use Jupyter in a similar fashion as they use MATLAB to analyze and plot their data. We will be sharing example Jupyter Notebooks soon that you can copy into your My Data and customize for your research. We also provide [Jupyter training](https://designsafe-ci.org/user-guide/tools/jupyterhub/).
+Many people use Jupyter in a similar fashion as they use MATLAB to analyze and plot their data. We will be sharing example Jupyter Notebooks soon that you can copy into your My Data and customize for your research. We also provide [Jupyter training](/user-guide/tools/jupyterhub/).
 
 ///
 

user-guide/usecases/README.md

@@ -1,6 +1,6 @@
 # DesignSafe Use Cases
 
-How to contribute to [DesignSafe Use Cases](https://designsafe-ci.org/user-guide/usecases/overview/).
+How to contribute to [DesignSafe Use Cases](/user-guide/usecases/overview/).
 
 ## A Guide to Adding Your Use Case Project