Pangenome stalling fixes (pseudogene removal) - #35

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epbrenner wants to merge 12 commits into

mainfrom

file_structure_checks

Commits on Jul 28, 2026

Adding data exporter functionality
epbrenner
committed
564bd27
Adding example data for export testing
epbrenner
committed
7cd8f95

Commits on Jul 29, 2026

Updated variable/function names
epbrenner
committed
5a944a9
Update data_curation.R
jananiravi
committed
b2072ca

Commits on Jul 30, 2026

fix refind=off in panaroo; other minor edits

jananiravi
and
epbrenner
committed
b0bbbe4

Commits on Jul 31, 2026

Update data_processing.R

jananiravi
and
epbrenner
committed
d15cc73

Commits on Aug 1, 2026

Create output dirs before .docker_path
jananiravi
committed
b1f1ec3

Commits on Aug 4, 2026

Minor pseudogene filtering updates

epbrenner
and
jananiravi
committed
6c3ce32
Merge branch 'main' into file_structure_checks
epbrenner
authored
fa2f5b2
minor changes
jananiravi
committed
091cdcb
ran devtools::document
jananiravi
committed
b98a99f

Commits on Aug 5, 2026

update panaroo to 1.7.0
AbhirupaGhosh
committed
8ca744d